C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 21B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243344 TTC21B-001 ENSG00000123607 9606 - 2:165873362-165953843 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243344
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243344 1.314±0.00 1.809±0.00 1.541±0.00 1.651±0.24 1.724±0.28 1.741±0.51 1.407±0.00 1.804±0.75 1.546±0.88 1.563±0.24 1.927±0.00 1.849±0.64 1.256±0.46 3.793±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0001 VISTA 2:165345029-165948304
CIL_0006CI CIL_0006CI_0001 CGP 2:165747591-165953843
CIL_0006CL CIL_0006CL_0001 CGP 2:165857475-166128013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IEA cilium
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0007224 IEA smoothened signaling pathway
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0021591 IEA ventricular system development
GO:0021798 IEA forebrain dorsal/ventral pattern formation
GO:0030991 IDA intraciliary transport particle A
GO:0035721 IEA intraciliary retrograde transport
GO:0035735 IEA intraciliary transport involved in cilium morphogenesis
GO:0060271 IEA cilium morphogenesis
GO:0061512 IMP protein localization to cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102718 Ttc21b-001 protein_coding Mus_musculus 0 3733
ENSMUST00000125446 Ttc21b-003 protein_coding Mus_musculus 0 3493
ENSMUST00000108492 Hif3a-002 protein_coding Mus_musculus 0.0001 55
ENSMUST00000146436 Accs-004 retained_intron Mus_musculus 0.0004 53

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