C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00087V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm668 VISTA 9606 2:165345029-165948304
GeneTranscriptPositionBiotype
ENSG00000115339 (GALNT3)
polypeptide N-acetylgalactosaminyltransferase 3 		ENST00000392701 (GALNT3-001) 165747591-165794682 protein_coding
ENST00000409882 (GALNT3-010) 165747803-165761907 protein_coding
ENST00000412248 (GALNT3-004) 165757047-165794659 protein_coding
ENST00000414977 (GALNT3-002) 165770529-165793879 protein_coding
ENST00000422973 (GALNT3-003) 165770625-165794247 protein_coding
ENST00000431484 (GALNT3-005) 165770431-165794650 protein_coding
ENST00000437849 (GALNT3-007) 165757068-165764959 nonsense_mediated_decay
ENST00000447156 (GALNT3-006) 165770666-165771691 protein_coding
ENST00000463254 (GALNT3-008) 165758618-165762025 retained_intron
ENSG00000123607 (TTC21B)
tetratricopeptide repeat domain 21B 		ENST00000243344 (TTC21B-001) 165873362-165953843 protein_coding
ENST00000392695 (TTC21B-003) 165857478-165890641 nonsense_mediated_decay
ENST00000464374 (TTC21B-006) 165928717-165953745 retained_intron
ENST00000476227 (TTC21B-007) 165949111-165953811 retained_intron
ENST00000484129 (TTC21B-008) 165898627-165907720 retained_intron
ENST00000486672 (TTC21B-004) 165857475-165871211 retained_intron
ENST00000489714 (TTC21B-005) 165857475-165870991 processed_transcript
ENST00000497425 (TTC21B-009) 165879634-165883955 processed_transcript
ENSG00000136531 (SCN2A)
sodium channel, voltage-gated, type II, alpha subunit 		ENST00000283256 (SCN2A-001) 165294031-165392053 protein_coding
ENST00000375427 (SCN2A-002) 165295773-165390029 protein_coding
ENST00000375437 (SCN2A-201) 165239402-165392308 protein_coding
ENST00000424833 (SCN2A-003) 165239402-165315598 protein_coding
ENST00000480032 (SCN2A-005) 165294044-165381003 retained_intron
ENST00000486878 (SCN2A-004) 165308666-165310745 retained_intron
ENSG00000178662 (CSRNP3)
cysteine-serine-rich nuclear protein 3 		ENST00000314499 (CSRNP3-201) 165469647-165689407 protein_coding
ENST00000342316 (CSRNP3-001) 165572339-165689407 protein_coding
ENST00000409420 (CSRNP3-006) 165574109-165680194 protein_coding
ENST00000409664 (CSRNP3-002) 165469698-165676319 protein_coding
ENST00000421875 (CSRNP3-003) 165469647-165679307 protein_coding
ENST00000464503 (CSRNP3-005) 165469706-165566981 processed_transcript
ENSG00000229195 (AC009495.4)
 ENST00000428888 (AC009495.4-001) 165794857-165846091 lincRNA
ENSG00000232411 (AC009495.3)
 ENST00000457108 (AC009495.3-001) 165833048-165839098 lincRNA
ENSG00000235192 (AC009495.2)
 ENST00000425688 (AC009495.2-001) 165794851-165810010 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00087V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm668 VISTA 10090 2:65692128-66294633
GeneTranscriptPositionBiotype
ENSMUSG00000026994 (Galnt3)
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 		ENSMUST00000028378 (Galnt3-001) 66082766-66124994 protein_coding
ENSMUST00000150793 (Galnt3-003) 66091162-66094071 processed_transcript
ENSMUST00000153563 (Galnt3-002) 66095641-66102483 processed_transcript
ENSMUST00000155453 (Galnt3-004) 66084086-66095224 processed_transcript
ENSMUSG00000034848 (Ttc21b)
tetratricopeptide repeat domain 21B 		ENSMUST00000102718 (Ttc21b-001) 66184327-66256617 protein_coding
ENSMUST00000125446 (Ttc21b-003) 66184643-66256592 protein_coding
ENSMUST00000131503 (Ttc21b-002) 66231116-66249410 retained_intron
ENSMUST00000169968 (Ttc21b-004) 66218015-66235138 retained_intron
ENSMUSG00000044647 (Csrnp3)
cysteine-serine-rich nuclear protein 3 		ENSMUST00000053910 (Csrnp3-002) 65845842-66025606 protein_coding
ENSMUST00000112394 (Csrnp3-004) 65948949-66023053 protein_coding
ENSMUST00000112397 (Csrnp3-005) 65845855-66023279 nonsense_mediated_decay
ENSMUST00000122912 (Csrnp3-001) 65845767-66031546 protein_coding
ENSMUST00000129133 (Csrnp3-006) 65860597-65949439 retained_intron
ENSMUST00000139896 (Csrnp3-003) 65845845-65878818 retained_intron
ENSMUST00000145598 (Csrnp3-008) 65931865-66023484 protein_coding
ENSMUST00000176109 (Csrnp3-007) 65930137-66023946 protein_coding
ENSMUSG00000064329 (Scn1a)
sodium channel, voltage-gated, type I, alpha 		ENSMUST00000077489 (Scn1a-004) 66270784-66351195 protein_coding
ENSMUST00000094951 (Scn1a-005) 66272884-66351177 protein_coding
ENSMUST00000112366 (Scn1a-001) 66270781-66410064 protein_coding
ENSMUST00000112371 (Scn1a-201) 66270782-66440837 protein_coding
ENSMUST00000129508 (Scn1a-002) 66348364-66440814 processed_transcript
ENSMUST00000138910 (Scn1a-006) 66335443-66440840 protein_coding
ENSMUST00000156865 (Scn1a-003) 66272892-66318139 processed_transcript
ENSMUSG00000075318 (Scn2a1)
sodium channel, voltage-gated, type II, alpha 1 		ENSMUST00000028377 (Scn2a1-001) 65620857-65767447 protein_coding
ENSMUST00000100067 (Scn2a1-201) 65670445-65767447 protein_coding
ENSMUST00000138368 (Scn2a1-003) 65682280-65683866 processed_transcript
ENSMUST00000144254 (Scn2a1-002) 65681048-65683872 protein_coding
ENSMUSG00000085160 (Gm13617)
predicted gene 13617 		ENSMUST00000155350 (Gm13617-001) 65944299-65954070 antisense
ENSMUSG00000086671 (Gm13618)
predicted gene 13618 		ENSMUST00000128859 (Gm13618-001) 66187836-66192813 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00087V_0001ENSG00000115339ENST00000392701ENST00000409882ENST00000412248ENST00000414977ENST00000422973ENST00000431484ENST00000437849ENST00000447156ENST00000463254ENSG00000123607ENST00000243344ENST00000392695ENST00000464374ENST00000476227ENST00000484129ENST00000486672ENST00000489714ENST00000497425ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000178662ENST00000314499ENST00000342316ENST00000409420ENST00000409664ENST00000421875ENST00000464503ENSG00000229195ENST00000428888ENSG00000232411ENST00000457108ENSG00000235192ENST00000425688CIL_00087V_0002ENSMUSG00000026994ENSMUST00000028378ENSMUST00000150793ENSMUST00000153563ENSMUST00000155453ENSMUSG00000034848ENSMUST00000102718ENSMUST00000125446ENSMUST00000131503ENSMUST00000169968ENSMUSG00000044647ENSMUST00000053910ENSMUST00000112394ENSMUST00000112397ENSMUST00000122912ENSMUST00000129133ENSMUST00000139896ENSMUST00000145598ENSMUST00000176109ENSMUSG00000064329ENSMUST00000077489ENSMUST00000094951ENSMUST00000112366ENSMUST00000112371ENSMUST00000129508ENSMUST00000138910ENSMUST00000156865ENSMUSG00000075318ENSMUST00000028377ENSMUST00000100067ENSMUST00000138368ENSMUST00000144254ENSMUSG00000085160ENSMUST00000155350ENSMUSG00000086671ENSMUST00000128859
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00087V_0001ENSG00000115339ENST00000392701ENST00000409882ENST00000412248ENST00000422973ENST00000437849ENSG00000123607ENST00000243344ENST00000392695ENST00000484129ENST00000486672ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000178662ENST00000314499ENST00000342316ENST00000409420ENST00000421875ENSG00000229195ENST00000428888ENSG00000232411ENST00000457108ENSG00000235192ENST00000425688CIL_00087V_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115339 ENST00000392701 0.095±0.00 N/A 0.395±0.00 0.083±0.01 0.436±0.00 1.272±0.79 0.024±0.00 0.552±0.42 0.324±0.25 0.962±0.10 N/A 2.896±2.75 1.248±0.63 3.518±0.00
ENST00000409882 0.107±0.00 0.340±0.00 N/A 0.697±0.00 1.878±0.65 4.168±1.03 N/A 2.384±0.00 0.142±0.08 2.212±0.00 N/A 5.608±5.19 1.726±0.81 5.572±3.30
ENST00000412248 N/A N/A 0.486±0.00 N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A 0.546±0.00 3.115±0.00
ENST00000414977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A
ENST00000431484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437849 N/A N/A N/A N/A 4.560±0.00 4.100±0.00 0.267±0.00 0.543±0.00 N/A N/A N/A N/A N/A N/A
ENST00000447156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000123607 ENST00000243344 1.314±0.00 1.809±0.00 1.541±0.00 1.651±0.24 1.724±0.28 1.741±0.51 1.407±0.00 1.804±0.75 1.546±0.88 1.563±0.24 1.927±0.00 1.849±0.64 1.256±0.46 3.793±0.07
ENST00000392695 N/A N/A N/A 0.992±0.00 1.554±0.00 1.689±0.00 N/A N/A N/A 1.108±0.00 1.199±0.00 2.166±0.58 N/A 3.598±0.00
ENST00000464374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.969±0.00 N/A
ENST00000486672 N/A N/A 17.795±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136531 ENST00000283256 0.004±0.00 0.037±0.00 N/A 12.338±6.01 0.110±0.05 0.048±0.02 0.018±0.00 0.857±0.00 0.089±0.00 0.039±0.01 0.016±0.00 0.380±0.22 0.019±0.00 0.146±0.09
ENST00000375427 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.026±0.00 N/A 0.214±0.00 N/A 0.230±0.00
ENST00000375437 N/A N/A N/A 6.533±1.08 N/A N/A N/A 0.272±0.00 N/A N/A N/A 0.070±0.03 0.067±0.00 0.060±0.00
ENST00000424833 N/A N/A N/A N/A N/A N/A 0.066±0.05 0.289±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480032 N/A N/A N/A N/A 0.078±0.00 N/A 0.030±0.00 N/A 0.034±0.00 N/A N/A 0.155±0.00 0.012±0.00 N/A
ENST00000486878 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A
ENSG00000178662 ENST00000314499 N/A 0.223±0.00 N/A 2.366±0.35 0.055±0.00 0.265±0.00 0.301±0.09 0.576±0.00 N/A N/A 0.013±0.01 0.182±0.00 N/A 0.206±0.03
ENST00000342316 N/A N/A N/A 11.467±0.00 0.407±0.00 N/A 0.092±0.00 N/A 1.820±0.00 N/A 0.003±0.00 0.234±0.00 0.035±0.01 N/A
ENST00000409420 N/A N/A N/A N/A N/A 0.338±0.00 0.404±0.00 N/A N/A N/A N/A 1.122±0.00 0.040±0.00 0.165±0.00
ENST00000409664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421875 N/A N/A N/A N/A N/A N/A N/A N/A 1.786±0.00 0.188±0.00 0.053±0.00 0.125±0.00 N/A N/A
ENST00000464503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229195 ENST00000428888 N/A 0.072±0.00 N/A 0.073±0.00 0.519±0.00 N/A N/A 0.207±0.00 N/A N/A N/A 0.186±0.00 0.167±0.08 0.096±0.00
ENSG00000232411 ENST00000457108 N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A 0.169±0.00 0.065±0.00 0.067±0.00
ENSG00000235192 ENST00000425688 N/A 0.072±0.00 0.599±0.00 0.219±0.00 N/A N/A N/A N/A 0.564±0.00 0.096±0.00 N/A 0.096±0.04 0.055±0.00 0.243±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026994 ENSMUST00000028378 0.180±0.17 0.046±0.03 1.040±0.16 0.127±0.02 0.474±0.18 5.417±5.40 0.030±0.02 2.223±0.43 0.193±0.10 0.803±0.17 0.061±0.04 0.783±0.09 2.570±0.45 10.848±3.59
ENSMUST00000150793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153563 N/A 0.448±0.19 N/A N/A 0.902±0.00 N/A 0.157±0.09 N/A 0.105±0.00 N/A 0.107±0.00 N/A N/A N/A
ENSMUST00000155453 N/A 0.451±0.00 N/A N/A 1.167±0.45 N/A 0.074±0.03 7.863±1.32 0.216±0.14 N/A 0.089±0.03 1.657±0.44 3.506±0.25 23.693±1.91
ENSMUSG00000034848 ENSMUST00000102718 2.756±1.46 2.815±0.53 4.203±0.08 4.497±1.63 2.123±0.25 1.456±0.16 1.710±0.34 4.683±0.24 0.843±0.19 3.058±0.20 0.530±0.14 3.595±1.38 1.117±0.84 23.344±1.91
ENSMUST00000125446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.05 2.020±1.07 0.546±0.27 23.271±0.00
ENSMUST00000131503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169968 N/A N/A N/A 0.613±0.10 N/A N/A N/A N/A N/A N/A N/A 0.435±0.08 N/A N/A
ENSMUSG00000044647 ENSMUST00000053910 N/A N/A N/A N/A 0.035±0.00 N/A 0.009±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSMUST00000112394 0.954±0.19 0.107±0.10 N/A 21.630±0.00 N/A N/A N/A 0.306±0.09 0.050±0.00 N/A N/A 1.305±0.30 0.065±0.01 N/A
ENSMUST00000112397 N/A 0.074±0.06 N/A N/A N/A 0.041±0.00 0.066±0.00 N/A N/A N/A N/A N/A N/A 5.254±1.20
ENSMUST00000122912 0.173±0.12 0.024±0.01 0.006±0.00 2.026±0.64 0.010±0.00 0.035±0.01 0.012±0.00 N/A 0.009±0.00 0.016±0.01 0.002±0.00 0.560±0.11 0.002±0.00 N/A
ENSMUST00000129133 N/A 0.249±0.00 N/A N/A N/A N/A 0.192±0.00 N/A 0.173±0.00 N/A N/A N/A N/A N/A
ENSMUST00000139896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145598 N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.667±0.15
ENSMUST00000176109 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A 0.372±0.15 N/A N/A
ENSMUSG00000064329 ENSMUST00000077489 0.033±0.03 N/A 0.070±0.00 2.704±0.00 0.014±0.00 N/A 0.008±0.00 0.012±0.01 0.004±0.00 0.026±0.00 0.010±0.01 0.027±0.01 0.006±0.00 0.116±0.04
ENSMUST00000094951 0.016±0.00 0.042±0.03 N/A N/A 0.014±0.00 N/A 0.022±0.01 N/A 0.007±0.01 N/A 0.014±0.00 0.079±0.05 N/A 0.055±0.01
ENSMUST00000112366 N/A N/A N/A 1.208±0.88 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112371 N/A N/A N/A 1.577±1.47 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138910 N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156865 0.016±0.00 N/A N/A 8.606±0.00 0.040±0.02 0.041±0.00 N/A 0.024±0.02 N/A 0.025±0.00 N/A 0.016±0.01 N/A 0.120±0.11
ENSMUSG00000075318 ENSMUST00000028377 0.134±0.00 N/A N/A 2.736±1.16 0.165±0.06 0.181±0.02 0.075±0.00 N/A 0.016±0.01 N/A N/A 0.286±0.03 N/A 0.127±0.02
ENSMUST00000100067 0.074±0.00 0.079±0.02 0.403±0.00 7.564±4.52 0.126±0.04 N/A N/A 0.046±0.00 0.021±0.01 N/A 0.105±0.01 0.143±0.08 0.021±0.01 0.020±0.00
ENSMUST00000138368 N/A 0.312±0.00 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.13 N/A
ENSMUSG00000085160 ENSMUST00000155350 N/A N/A N/A 0.103±0.02 N/A N/A 0.081±0.03 0.069±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000086671 ENSMUST00000128859 N/A N/A 0.037±0.00 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 0.244±0.00 0.528±0.37

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