C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin polymerizing factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123989 CHPF 9606 - 2:219538947-219543787 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243776 CHPF-001 219538947-219543787 protein_coding
  ENST00000373891 CHPF-002 219541460-219543573 protein_coding
  ENST00000535926 CHPF-201 219538948-219543097 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243776ENST00000373891ENST00000535926
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243776 9.417±0.00 11.193±0.00 1.191±0.00 14.022±9.02 8.715±7.75 8.550±6.24 18.099±15.76 16.132±12.71 23.497±21.28 14.771±13.98 14.135±0.00 61.988±42.98 146.355±26.97 52.726±13.26
ENST00000373891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A
ENST00000535926 N/A N/A N/A N/A N/A N/A 0.496±0.00 N/A N/A N/A 0.382±0.00 34.416±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_000414 CIL_000414_0002 CGP 2:219514170-219543787

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005975 TAS carbohydrate metabolic process
GO:0008152 IEA metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078037 chpfb chondroitin polymerizing factor b protein_coding Danio_rerio
ENSMUSG00000032997 Chpf chondroitin polymerizing factor protein_coding Mus_musculus

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