C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000535926 CHPF-201 ENSG00000123989 9606 - 2:219538948-219543097 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartMuscleOvaryENST00000535926
Transcript ID Heart Muscle Ovary
ENST00000535926 0.496±0.00 0.382±0.00 34.416±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_000414 CIL_000414_0002 CGP 2:219514170-219543787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143496 Chpf-004 retained_intron Mus_musculus 0 2182
ENSMUST00000094818 Chpf-002 protein_coding Mus_musculus 0 2182
ENSMUST00000079205 Chpf-001 protein_coding Mus_musculus 0 2182
ENSMUST00000138683 Chpf-003 nonsense_mediated_decay Mus_musculus 0 1905

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