C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin polymerizing factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032997 Chpf 10090 - 1:75474569-75479307 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079205 Chpf-001 75474569-75479271 protein_coding
  ENSMUST00000094818 Chpf-002 75474575-75479307 protein_coding
  ENSMUST00000124042 Chpf-005 75477510-75479114 nonsense_mediated_decay
  ENSMUST00000138683 Chpf-003 75474576-75479119 nonsense_mediated_decay
  ENSMUST00000143496 Chpf-004 75474576-75478746 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079205ENSMUST00000094818ENSMUST00000138683ENSMUST00000143496
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079205 47.112±16.07 49.395±6.11 46.426±5.99 29.827±3.20 29.874±4.39 25.521±2.89 9.744±2.69 13.862±3.12 2.394±1.88 31.974±3.07 0.929±0.23 60.586±28.16 32.007±5.52 10.761±4.37
ENSMUST00000094818 N/A 17.233±4.02 N/A 3.572±0.28 5.925±2.95 5.861±1.02 N/A 2.521±0.76 0.367±0.32 6.605±2.69 0.213±0.00 13.378±5.14 N/A 2.781±0.31
ENSMUST00000138683 5.028±0.00 8.877±0.80 N/A N/A 5.496±0.00 N/A N/A N/A 0.452±0.02 N/A 0.331±0.14 N/A N/A 3.530±0.00
ENSMUST00000143496 N/A N/A N/A N/A 0.779±0.00 N/A 1.115±0.00 N/A N/A N/A 0.171±0.06 1.960±0.26 N/A 0.330±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_000414 CIL_000414_0003 CGP 1:75450436-75479307
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0016021 IEA integral component of membrane
GO:0016757 IMP transferase activity, transferring glycosyl groups
GO:0030206 IMP chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078037 chpfb chondroitin polymerizing factor b protein_coding Danio_rerio
ENSG00000123989 CHPF chondroitin polymerizing factor protein_coding Homo_sapiens

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