C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243776 CHPF-001 ENSG00000123989 9606 - 2:219538947-219543787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243776 9.417±0.00 11.193±0.00 1.191±0.00 14.022±9.02 8.715±7.75 8.550±6.24 18.099±15.76 16.132±12.71 23.497±21.28 14.771±13.98 14.135±0.00 61.988±42.98 146.355±26.97 52.726±13.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_000414 CIL_000414_0002 CGP 2:219514170-219543787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0047238 IEA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079205 Chpf-001 protein_coding Mus_musculus 0 2739
ENSMUST00000143496 Chpf-004 retained_intron Mus_musculus 0 2183
ENSMUST00000094818 Chpf-002 protein_coding Mus_musculus 0 2182
ENSMUST00000138683 Chpf-003 nonsense_mediated_decay Mus_musculus 0 1905
ENSMUST00000124042 Chpf-005 nonsense_mediated_decay Mus_musculus 0 451

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