C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ras responsive element binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124782 RREB1 9606 + 6:7107597-7251980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334984 RREB1-003 7108031-7250012 protein_coding
  ENST00000349384 RREB1-002 7108031-7251030 protein_coding
  ENST00000379933 RREB1-004 7107597-7249274 protein_coding
  ENST00000379938 RREB1-001 7107808-7251980 protein_coding
  ENST00000467782 RREB1-012 7108026-7181923 protein_coding
  ENST00000471433 RREB1-011 7107821-7210871 protein_coding
  ENST00000475946 RREB1-005 7108632-7219091 retained_intron
  ENST00000483150 RREB1-008 7139245-7230433 protein_coding
  ENST00000491191 RREB1-007 7107799-7189306 protein_coding
  ENST00000611109 RREB1-201 7230642-7250012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000334984ENST00000379933ENST00000379938ENST00000471433ENST00000475946ENST00000491191ENST00000611109
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000334984 N/A N/A 1.398±0.00 N/A N/A N/A N/A N/A 0.731±0.00 N/A N/A
ENST00000379933 2.424±0.00 N/A N/A N/A 0.548±0.00 N/A N/A N/A N/A N/A N/A
ENST00000379938 1.348±0.00 0.235±0.00 4.705±0.00 0.852±0.00 3.983±0.00 0.900±0.00 1.271±0.63 2.739±0.00 2.696±0.00 3.930±3.52 1.235±0.00
ENST00000471433 N/A 0.770±0.00 N/A N/A N/A N/A 6.977±0.00 N/A N/A N/A N/A
ENST00000475946 N/A 0.053±0.00 1.846±0.00 N/A 0.270±0.00 N/A N/A N/A N/A 2.049±0.00 N/A
ENST00000491191 N/A N/A N/A N/A N/A N/A N/A N/A 4.156±0.00 N/A N/A
ENST00000611109 N/A N/A N/A N/A N/A N/A N/A N/A 1.150±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S8 CIL_0003S8_0001 CGP 6:6588108-7251980
CIL_000817 CIL_000817_0001 VISTA 6:6863717-7465821
CIL_0003S7 CIL_0003S7_0001 CGP 6:7107597-7347446

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007265 TAS Ras protein signal transduction
GO:0007275 TAS multicellular organismal development
GO:0016604 TAS nuclear body
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 TAS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042652 rreb1b ras responsive element binding protein 1b protein_coding Danio_rerio
ENSDARG00000063701 rreb1a ras responsive element binding protein 1a protein_coding Danio_rerio
ENSMUSG00000039087 Rreb1 ras responsive element binding protein 1 protein_coding Mus_musculus

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