C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125691 RPL23 9606 - 17:38847865-38853843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000245857 RPL23-004 38850081-38853428 protein_coding
  ENST00000378096 RPL23-006 38850439-38853629 protein_coding
  ENST00000394332 RPL23-003 38847865-38853722 protein_coding
  ENST00000394333 RPL23-002 38847865-38853735 protein_coding
  ENST00000470646 RPL23-005 38850422-38853424 protein_coding
  ENST00000479035 RPL23-001 38847867-38853843 protein_coding
  ENST00000577407 RPL23-010 38850114-38853737 protein_coding
  ENST00000577760 RPL23-007 38850684-38853764 retained_intron
  ENST00000584056 RPL23-009 38852598-38853738 retained_intron
  ENST00000584583 RPL23-011 38850086-38850661 retained_intron
  ENST00000584912 RPL23-008 38850081-38853740 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000245857ENST00000394332ENST00000470646ENST00000479035ENST00000577407
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000245857 717.789±0.00 678.159±0.00 N/A 108.662±92.23 249.343±212.67 410.058±379.60 234.164±0.00 215.627±181.94 156.865±98.94 391.942±354.38 543.746±0.00 3392.567±2627.09 1456.718±1236.59 665.860±160.83
ENST00000394332 211.655±0.00 256.022±0.00 48.194±0.00 57.860±14.02 143.523±27.92 129.927±40.37 65.320±7.12 102.985±3.06 115.878±62.78 144.121±34.43 105.955±24.94 704.044±381.80 374.312±92.09 122.076±0.00
ENST00000470646 318.829±0.00 376.623±0.00 N/A 110.408±0.00 463.868±0.00 438.590±0.00 N/A N/A 117.145±0.00 435.797±0.00 239.250±0.00 N/A N/A 330.852±0.00
ENST00000479035 N/A N/A N/A 2.577±0.00 N/A N/A 2.654±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000577407 N/A N/A 24.822±0.00 N/A N/A 37.125±0.00 N/A N/A N/A N/A 16.541±0.00 84.446±0.00 N/A 175.114±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003Y CIL_00003Y_0001 CGP 17:38835088-38853843
CIL_0006QO CIL_0006QO_0001 CGP 17:38847865-38921770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006610 NAS ribosomal protein import into nucleus
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053457 rpl23 ribosomal protein L23 protein_coding Danio_rerio
ENSMUSG00000071415 Rpl23 ribosomal protein L23 protein_coding Mus_musculus

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