C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071415 Rpl23 10090 - 11:97777527-97782437 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103146 Rpl23-001 97777527-97782437 protein_coding
  ENSMUST00000128801 Rpl23-004 97781404-97782382 protein_coding
  ENSMUST00000150955 Rpl23-005 97778056-97778635 processed_transcript
  ENSMUST00000151118 Rpl23-002 97778038-97782276 processed_transcript
  ENSMUST00000151965 Rpl23-003 97781362-97782362 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103146ENSMUST00000151118
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103146 89.309±35.06 21.344±2.07 69.939±16.23 154.837±7.50 70.500±23.58 92.925±11.82 64.179±11.32 107.327±14.75 211.056±204.06 81.096±6.50 68.396±21.41 85.682±74.17 179.136±126.77 63.598±30.41
ENSMUST00000151118 N/A N/A 112.741±25.48 70.196±36.54 49.299±0.00 N/A 10.111±0.00 N/A 120.004±0.00 N/A 150.461±32.29 702.131±128.55 329.445±219.57 187.514±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003Y CIL_00003Y_0002 CGP 11:97771481-97782437
CIL_0006QO CIL_0006QO_0002 CGP 11:97777527-97838764

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 ISA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006412 ISA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0022626 ISA cytosolic ribosome
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053457 rpl23 ribosomal protein L23 protein_coding Danio_rerio
ENSG00000125691 RPL23 ribosomal protein L23 protein_coding Homo_sapiens

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