C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00003Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000275489-ENSG00000125691 CGP 9606 17:38835088-38853843
GeneTranscriptPositionBiotype
ENSG00000125691 (RPL23)
ribosomal protein L23 		ENST00000245857 (RPL23-004) 38850081-38853428 protein_coding
ENST00000378096 (RPL23-006) 38850439-38853629 protein_coding
ENST00000394332 (RPL23-003) 38847865-38853722 protein_coding
ENST00000394333 (RPL23-002) 38847865-38853735 protein_coding
ENST00000470646 (RPL23-005) 38850422-38853424 protein_coding
ENST00000479035 (RPL23-001) 38847867-38853843 protein_coding
ENST00000577407 (RPL23-010) 38850114-38853737 protein_coding
ENST00000577760 (RPL23-007) 38850684-38853764 retained_intron
ENST00000584056 (RPL23-009) 38852598-38853738 retained_intron
ENST00000584583 (RPL23-011) 38850086-38850661 retained_intron
ENST00000584912 (RPL23-008) 38850081-38853740 retained_intron
ENSG00000275489 (C17orf98)
chromosome 17 open reading frame 98 		ENST00000614158 (C17orf98-001) 38835088-38841455 protein_coding
CIL_00003Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018543-ENSMUSG00000071415 CGP 10090 11:97771481-97782437
GeneTranscriptPositionBiotype
ENSMUSG00000018543 (1700001P01Rik)
RIKEN cDNA 1700001P01 gene 		ENSMUST00000107576 (1700001P01Rik-001) 97771481-97775918 protein_coding
ENSMUSG00000064901 (Snora21)
small nucleolar RNA, H/ACA box 21 		ENSMUST00000082967 (Snora21-201) 97781639-97781775 snoRNA
ENSMUSG00000071415 (Rpl23)
ribosomal protein L23 		ENSMUST00000103146 (Rpl23-001) 97777527-97782437 protein_coding
ENSMUST00000128801 (Rpl23-004) 97781404-97782382 protein_coding
ENSMUST00000150955 (Rpl23-005) 97778056-97778635 processed_transcript
ENSMUST00000151118 (Rpl23-002) 97778038-97782276 processed_transcript
ENSMUST00000151965 (Rpl23-003) 97781362-97782362 processed_transcript
ENSMUSG00000098813 (Gm27326)
predicted gene, 27326 		ENSMUST00000183504 (Gm27326-201) 97780182-97780276 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003Y_0001ENSG00000125691ENST00000245857ENST00000378096ENST00000394332ENST00000394333ENST00000470646ENST00000479035ENST00000577407ENST00000577760ENST00000584056ENST00000584583ENST00000584912ENSG00000275489ENST00000614158CIL_00003Y_0002ENSMUSG00000018543ENSMUST00000107576ENSMUSG00000064901ENSMUST00000082967ENSMUSG00000071415ENSMUST00000103146ENSMUST00000128801ENSMUST00000150955ENSMUST00000151118ENSMUST00000151965ENSMUSG00000098813ENSMUST00000183504
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003Y_0001ENSG00000125691ENST00000245857ENST00000394332ENST00000470646ENST00000479035ENST00000577407ENSG00000275489ENST00000614158CIL_00003Y_0002ENSMUSG00000018543ENSMUST00000107576ENSMUSG00000064901ENSMUST00000082967ENSMUSG00000071415ENSMUST00000103146ENSMUST00000151118ENSMUSG00000098813ENSMUST00000183504
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125691 ENST00000245857 717.789±0.00 678.159±0.00 N/A 108.662±92.23 249.343±212.67 410.058±379.60 234.164±0.00 215.627±181.94 156.865±98.94 391.942±354.38 543.746±0.00 3392.567±2627.09 1456.718±1236.59 665.860±160.83
ENST00000378096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394332 211.655±0.00 256.022±0.00 48.194±0.00 57.860±14.02 143.523±27.92 129.927±40.37 65.320±7.12 102.985±3.06 115.878±62.78 144.121±34.43 105.955±24.94 704.044±381.80 374.312±92.09 122.076±0.00
ENST00000394333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470646 318.829±0.00 376.623±0.00 N/A 110.408±0.00 463.868±0.00 438.590±0.00 N/A N/A 117.145±0.00 435.797±0.00 239.250±0.00 N/A N/A 330.852±0.00
ENST00000479035 N/A N/A N/A 2.577±0.00 N/A N/A 2.654±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000577407 N/A N/A 24.822±0.00 N/A N/A 37.125±0.00 N/A N/A N/A N/A 16.541±0.00 84.446±0.00 N/A 175.114±0.00
ENST00000577760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275489 ENST00000614158 N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A 0.149±0.07 0.092±0.02 11.396±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018543 ENSMUST00000107576 0.218±0.13 N/A 0.065±0.01 0.244±0.09 0.159±0.05 0.208±0.05 0.095±0.03 0.065±0.00 0.049±0.02 0.226±0.00 0.215±0.00 0.336±0.20 0.179±0.11 94.843±4.39
ENSMUSG00000064901 ENSMUST00000082967 1796.000±0.00 N/A 8.072±1.13 21.564±3.56 1540.553±682.89 N/A N/A 843.750±0.00 18.218±12.93 N/A 2.487±0.00 21.147±8.64 23.933±22.39 342.388±329.56
ENSMUSG00000071415 ENSMUST00000103146 89.309±35.06 21.344±2.07 69.939±16.23 154.837±7.50 70.500±23.58 92.925±11.82 64.179±11.32 107.327±14.75 211.056±204.06 81.096±6.50 68.396±21.41 85.682±74.17 179.136±126.77 63.598±30.41
ENSMUST00000128801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151118 N/A N/A 112.741±25.48 70.196±36.54 49.299±0.00 N/A 10.111±0.00 N/A 120.004±0.00 N/A 150.461±32.29 702.131±128.55 329.445±219.57 187.514±0.00
ENSMUST00000151965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098813 ENSMUST00000183504 N/A N/A N/A N/A N/A 10739.070±2693.73 N/A N/A 516.226±0.00 3493.230±0.00 N/A 1455.976±775.84 1081.471±283.80 N/A

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