C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 4C, cysteine peptidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125703 ATG4C 9606 + 1:62784135-62865513 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317868 ATG4C-001 62784135-62865513 protein_coding
  ENST00000371118 ATG4C-004 62785233-62819179 protein_coding
  ENST00000371120 ATG4C-002 62784135-62865513 protein_coding
  ENST00000414558 ATG4C-005 62821183-62835529 protein_coding
  ENST00000443289 ATG4C-003 62784135-62819065 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317868ENST00000371118ENST00000371120ENST00000414558ENST00000443289
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317868 0.571±0.00 N/A 1.354±0.35 0.339±0.00 1.254±0.00 N/A N/A 0.751±0.05 N/A N/A 0.324±0.08 0.571±0.00 N/A
ENST00000371118 N/A N/A N/A N/A N/A 0.636±0.00 N/A N/A 0.927±0.00 N/A N/A N/A N/A
ENST00000371120 1.287±0.00 0.330±0.00 1.822±1.27 1.201±0.25 2.557±0.00 0.512±0.06 1.075±0.00 0.733±0.00 0.872±0.37 N/A 0.645±0.50 1.471±0.88 1.438±0.16
ENST00000414558 N/A N/A N/A N/A N/A 1.261±0.00 N/A N/A 1.389±0.00 N/A N/A N/A N/A
ENST00000443289 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.680±0.00 N/A 3.311±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G5 CIL_0002G5_0001 CGP 1:62597487-62865513
CIL_0008H9 CIL_0008H9_0001 VISTA 1:62603678-63205223
CIL_00085L CIL_00085L_0001 VISTA 1:62677863-63279213
CIL_00089A CIL_00089A_0001 VISTA 1:62698611-63300046

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IGI autophagic vacuole assembly
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0005576 IDA extracellular region
GO:0005737 IEA:ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006508 IEA:IDA proteolysis
GO:0006612 ISS protein targeting to membrane
GO:0006914 IEA:IGI autophagy
GO:0008233 IDA peptidase activity
GO:0008234 IEA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044373 atg4c autophagy-related 4C (yeast) protein_coding Danio_rerio
ENSMUSG00000028550 Atg4c autophagy related 4C, cysteine peptidase protein_coding Mus_musculus

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