C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00089A_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs169 VISTA 9606 1:62698611-63300046
GeneTranscriptPositionBiotype
ENSG00000125703 (ATG4C)
autophagy related 4C, cysteine peptidase 		ENST00000317868 (ATG4C-001) 62784135-62865513 protein_coding
ENST00000371118 (ATG4C-004) 62785233-62819179 protein_coding
ENST00000371120 (ATG4C-002) 62784135-62865513 protein_coding
ENST00000414558 (ATG4C-005) 62821183-62835529 protein_coding
ENST00000443289 (ATG4C-003) 62784135-62819065 protein_coding
ENSG00000203605 (RP11-335E6.2)
 ENST00000455038 (RP11-335E6.2-001) 63139250-63163153 lincRNA
ENSG00000223683 (AL138935.1)
 ENST00000429660 (AL138935.1-001) 63262113-63262707 processed_pseudogene
ENSG00000227485 (RP11-5P4.2)
 ENST00000418091 (RP11-5P4.2-001) 63024207-63025658 lincRNA
ENSG00000228734 (RP11-335E6.3)
 ENST00000449140 (RP11-335E6.3-001) 63249920-63251771 lincRNA
ENSG00000229537 (RP11-5P4.1)
 ENST00000420285 (RP11-5P4.1-003) 63000497-63010925 lincRNA
ENST00000420659 (RP11-5P4.1-001) 63000497-63012471 lincRNA
ENST00000425352 (RP11-5P4.1-002) 63000497-63011268 lincRNA
ENSG00000234318 (RP4-771M4.3)
 ENST00000450811 (RP4-771M4.3-001) 62896009-62901639 lincRNA
ENSG00000235545 (RP11-230B22.1)
 ENST00000453229 (RP11-230B22.1-001) 62688482-62710694 antisense
ENSG00000252259 (RNA5SP49)
RNA, 5S ribosomal pseudogene 49 		ENST00000516450 (RNA5SP49-201) 63186336-63186450 rRNA
ENSG00000271593 (RP11-335E6.4)
 ENST00000432537 (RP11-335E6.4-002) 63159087-63160410 lincRNA
ENST00000447183 (RP11-335E6.4-001) 63159083-63162636 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00089A_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs169 VISTA 10090 4:99074142-99675600
GeneTranscriptPositionBiotype
ENSMUSG00000028550 (Atg4c)
autophagy related 4C, cysteine peptidase 		ENSMUST00000030279 (Atg4c-001) 99193934-99259787 protein_coding
ENSMUST00000152121 (Atg4c-002) 99218091-99221695 processed_transcript
ENSMUST00000180278 (Atg4c-201) 99194147-99259783 protein_coding
ENSMUSG00000028556 (Dock7)
dedicator of cytokinesis 7 		ENSMUST00000030286 (Dock7-001) 98936675-99120860 protein_coding
ENSMUST00000075836 (Dock7-201) 98936665-99120915 protein_coding
ENSMUST00000124040 (Dock7-011) 98944658-98954846 processed_transcript
ENSMUST00000124466 (Dock7-002) 98936857-99023390 processed_transcript
ENSMUST00000127417 (Dock7-007) 98936857-98973169 protein_coding
ENSMUST00000127946 (Dock7-005) 98991393-99008163 protein_coding
ENSMUST00000131386 (Dock7-003) 99007941-99023463 processed_transcript
ENSMUST00000139152 (Dock7-008) 98955212-98962216 processed_transcript
ENSMUST00000140225 (Dock7-009) 98944253-98945205 processed_transcript
ENSMUST00000140848 (Dock7-010) 98958988-98960314 processed_transcript
ENSMUST00000150254 (Dock7-004) 98989309-99009305 protein_coding
ENSMUST00000153362 (Dock7-006) 99003750-99008480 processed_transcript
ENSMUSG00000067261 (Foxd3)
forkhead box D3 		ENSMUST00000087285 (Foxd3-001) 99656299-99658622 protein_coding
ENSMUSG00000070891 (Gm12689)
predicted gene 12689 		ENSMUST00000094955 (Gm12689-001) 99295900-99297258 protein_coding
ENSMUSG00000081150 (Gm12684)
predicted gene 12684 		ENSMUST00000118675 (Gm12684-001) 99430256-99431254 processed_pseudogene
ENSMUSG00000081733 (Gm12852)
predicted gene 12852 		ENSMUST00000119478 (Gm12852-001) 99103060-99103778 processed_pseudogene
ENSMUSG00000082442 (Gm12686)
predicted gene 12686 		ENSMUST00000120546 (Gm12686-001) 99418773-99419169 processed_pseudogene
ENSMUSG00000083698 (Gm12687)
predicted gene 12687 		ENSMUST00000119752 (Gm12687-001) 99615817-99616522 processed_pseudogene
ENSMUSG00000086096 (Gm12688)
predicted gene 12688 		ENSMUST00000136525 (Gm12688-001) 99653607-99654983 lincRNA
ENSMUSG00000086498 (Gm12681)
predicted gene 12681 		ENSMUST00000132337 (Gm12681-001) 99146914-99161642 lincRNA
ENSMUSG00000086592 (Gm12682)
predicted gene 12682 		ENSMUST00000144637 (Gm12682-001) 99662541-99712972 antisense
ENSMUSG00000087332 (Gm12690)
predicted gene 12690 		ENSMUST00000132108 (Gm12690-001) 99569500-99573011 lincRNA
ENSMUSG00000087395 (Gm12705)
predicted gene 12705 		ENSMUST00000129460 (Gm12705-001) 99116414-99118301 antisense

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089A_0001ENSG00000125703ENST00000317868ENST00000371118ENST00000371120ENST00000414558ENST00000443289ENSG00000203605ENST00000455038ENSG00000223683ENST00000429660ENSG00000227485ENST00000418091ENSG00000228734ENST00000449140ENSG00000229537ENST00000420285ENST00000420659ENST00000425352ENSG00000234318ENST00000450811ENSG00000235545ENST00000453229ENSG00000252259ENST00000516450ENSG00000271593ENST00000432537ENST00000447183CIL_00089A_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089A_0001ENSG00000125703ENST00000317868ENST00000371118ENST00000371120ENST00000414558ENST00000443289ENSG00000203605ENST00000455038ENSG00000223683ENST00000429660ENSG00000227485ENST00000418091ENSG00000228734ENST00000449140ENSG00000229537ENST00000420285ENST00000425352ENSG00000234318ENST00000450811ENSG00000235545ENST00000453229ENSG00000252259ENST00000516450ENSG00000271593ENST00000432537ENST00000447183CIL_00089A_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125703 ENST00000317868 N/A 0.571±0.00 N/A 1.354±0.35 0.339±0.00 1.254±0.00 N/A N/A 0.751±0.05 N/A N/A 0.324±0.08 0.571±0.00 N/A
ENST00000371118 N/A N/A N/A N/A N/A N/A 0.636±0.00 N/A N/A 0.927±0.00 N/A N/A N/A N/A
ENST00000371120 N/A 1.287±0.00 0.330±0.00 1.822±1.27 1.201±0.25 2.557±0.00 0.512±0.06 1.075±0.00 0.733±0.00 0.872±0.37 N/A 0.645±0.50 1.471±0.88 1.438±0.16
ENST00000414558 N/A N/A N/A N/A N/A N/A 1.261±0.00 N/A N/A 1.389±0.00 N/A N/A N/A N/A
ENST00000443289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.680±0.00 N/A 3.311±0.00 N/A
ENSG00000203605 ENST00000455038 0.131±0.00 0.510±0.00 N/A 0.195±0.00 0.249±0.00 0.082±0.00 0.124±0.00 0.460±0.00 0.091±0.00 0.014±0.00 0.437±0.00 0.068±0.05 N/A 0.415±0.00
ENSG00000223683 ENST00000429660 N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A 0.472±0.00
ENSG00000227485 ENST00000418091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.00
ENSG00000228734 ENST00000449140 0.014±0.00 0.082±0.00 N/A 0.014±0.00 0.053±0.00 0.049±0.00 N/A 0.013±0.00 0.011±0.00 N/A 0.035±0.00 0.141±0.00 0.048±0.00 0.535±0.28
ENSG00000229537 ENST00000420285 N/A N/A 0.566±0.00 N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A 0.062±0.00
ENST00000420659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425352 N/A N/A N/A 0.249±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00
ENSG00000234318 ENST00000450811 0.082±0.00 0.259±0.00 N/A 0.097±0.00 0.273±0.00 0.534±0.00 0.394±0.00 0.609±0.00 0.343±0.00 0.040±0.00 0.444±0.00 0.219±0.00 0.121±0.01 0.916±0.00
ENSG00000235545 ENST00000453229 0.018±0.00 0.061±0.00 N/A 0.304±0.14 0.407±0.00 N/A 0.017±0.00 0.050±0.00 0.087±0.00 N/A N/A 0.133±0.12 0.072±0.00 0.096±0.05
ENSG00000252259 ENST00000516450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.00
ENSG00000271593 ENST00000432537 N/A N/A N/A N/A N/A N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000447183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.275±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028550 ENSMUST00000030279 2.761±0.52 1.538±0.25 2.762±0.27 2.486±1.12 1.370±0.67 0.917±0.50 1.067±0.15 2.933±0.49 1.762±0.75 2.165±0.49 1.921±0.42 2.531±1.31 1.775±0.93 3.509±2.11
ENSMUST00000152121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.271±0.00
ENSMUST00000180278 0.498±0.07 0.876±0.00 2.834±0.73 1.324±0.19 3.052±0.00 0.536±0.13 0.301±0.00 0.707±0.28 1.025±0.28 0.750±0.18 0.705±0.18 3.251±1.38 2.424±0.94 1.087±0.53
ENSMUSG00000028556 ENSMUST00000030286 1.666±0.96 N/A 3.143±0.19 15.676±3.49 1.017±0.00 N/A 0.712±0.25 N/A N/A N/A 0.393±0.06 5.589±2.54 2.729±0.00 1.475±0.07
ENSMUST00000075836 5.255±3.04 5.564±0.87 3.471±0.12 3.270±0.00 2.797±1.47 4.005±0.66 0.570±0.00 2.267±1.01 1.608±1.09 6.563±1.93 0.314±0.12 5.924±3.21 4.747±2.12 2.393±0.13
ENSMUST00000124040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124466 1.386±0.00 2.620±0.36 N/A N/A 2.292±0.20 N/A 0.761±0.24 N/A 1.429±0.69 N/A 0.300±0.07 5.887±0.24 2.688±0.63 1.014±0.00
ENSMUST00000127417 N/A N/A 7.481±1.81 10.556±4.21 N/A N/A N/A N/A 1.793±0.37 N/A 0.810±0.17 10.541±0.00 6.209±2.04 2.664±0.00
ENSMUST00000127946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139152 N/A N/A N/A N/A N/A 9.487±0.00 3.195±0.00 7.647±0.20 2.160±0.00 13.319±0.00 N/A 19.724±0.00 N/A 10.005±0.93
ENSMUST00000140225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067261 ENSMUST00000087285 0.159±0.02 0.697±0.31 1.383±0.46 0.983±0.35 0.427±0.13 1.457±0.19 0.318±0.08 0.053±0.03 0.026±0.02 0.224±0.11 0.591±0.09 0.130±0.05 0.087±0.08 0.176±0.06
ENSMUSG00000070891 ENSMUST00000094955 0.227±0.14 0.147±0.12 0.448±0.10 0.251±0.17 0.241±0.12 0.178±0.09 0.101±0.04 0.139±0.05 0.225±0.11 0.157±0.08 0.205±0.07 0.209±0.12 0.132±0.04 0.265±0.12
ENSMUSG00000081150 ENSMUST00000118675 0.039±0.00 N/A N/A 0.029±0.00 0.073±0.00 0.070±0.00 N/A 0.029±0.00 0.067±0.01 0.050±0.00 N/A 0.194±0.19 0.130±0.00 0.982±0.64
ENSMUSG00000081733 ENSMUST00000119478 0.066±0.01 N/A 0.050±0.00 0.445±0.00 0.134±0.00 0.185±0.06 0.054±0.00 N/A 0.053±0.03 0.107±0.00 N/A 0.163±0.15 0.124±0.01 0.074±0.02
ENSMUSG00000082442 ENSMUST00000120546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A
ENSMUSG00000083698 ENSMUST00000119752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00
ENSMUSG00000086096 ENSMUST00000136525 0.143±0.08 0.305±0.15 N/A 0.757±0.00 0.334±0.16 0.569±0.34 0.216±0.16 0.139±0.06 0.040±0.02 0.386±0.25 1.015±0.51 0.204±0.04 0.141±0.10 0.272±0.18
ENSMUSG00000086498 ENSMUST00000132337 0.110±0.07 0.247±0.10 N/A 0.026±0.00 0.188±0.05 0.138±0.01 0.059±0.00 0.106±0.04 0.060±0.00 0.079±0.00 0.044±0.00 0.272±0.16 0.074±0.04 0.210±0.07
ENSMUSG00000086592 ENSMUST00000144637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.12 N/A N/A N/A
ENSMUSG00000087332 ENSMUST00000132108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.886±1.13
ENSMUSG00000087395 ENSMUST00000129460 0.210±0.05 N/A 0.087±0.00 0.209±0.11 0.196±0.03 N/A 0.043±0.00 0.128±0.03 0.041±0.02 0.164±0.10 0.053±0.01 0.221±0.05 0.100±0.00 0.085±0.03

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