C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptides B and B1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125835 SNRPB 9606 - 20:2461634-2470853 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339610 SNRPB-201 2461643-2470819 protein_coding
  ENST00000381342 SNRPB-001 2461634-2470853 protein_coding
  ENST00000438552 SNRPB-002 2461634-2470853 protein_coding
  ENST00000474384 SNRPB-003 2461660-2470732 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339610ENST00000381342ENST00000438552
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339610 39.626±0.00 80.363±0.00 22.747±14.23 20.922±8.78 23.017±13.02 14.965±11.64 25.265±20.30 36.904±0.00 60.170±54.94 24.832±15.00 97.085±48.62 101.943±16.62 65.635±3.20
ENST00000381342 N/A N/A N/A N/A N/A N/A N/A 5.810±0.00 N/A N/A N/A N/A N/A
ENST00000438552 24.760±0.00 36.739±0.00 18.652±0.00 13.478±0.00 19.506±0.00 N/A N/A N/A N/A N/A 201.950±180.64 63.847±43.06 43.277±12.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FT CIL_0000FT_0001 CGP 20:2380908-2470853
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071204 IEA histone pre-mRNA 3'end processing complex
GO:0071208 IEA histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011125 snrpb small nuclear ribonucleoprotein polypeptides B and B1 protein_coding Danio_rerio
ENSMUSG00000027404 Snrpb small nuclear ribonucleoprotein B protein_coding Mus_musculus

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