C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptides B and B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438552 SNRPB-002 ENSG00000125835 9606 - 20:2461634-2470853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonOvaryPlacentaTestisENST00000438552
Transcript ID Adipose Adrenal Brain Breast Colon Ovary Placenta Testis
ENST00000438552 24.760±0.00 36.739±0.00 18.652±0.00 13.478±0.00 19.506±0.00 201.950±180.64 63.847±43.06 43.277±12.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FT CIL_0000FT_0001 CGP 20:2380908-2470853
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071204 IEA histone pre-mRNA 3'end processing complex
GO:0071208 IEA histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103199 Snrpb-001 protein_coding Mus_musculus 0 1033
ENSMUST00000147570 Snrpb-002 processed_transcript Mus_musculus 0 732
ENSMUST00000098402 Snrpn-202 protein_coding Mus_musculus 0 584
ENSMUST00000059305 Snrpn-201 protein_coding Mus_musculus 0 584
ENSMUST00000139225 Snrpb-003 retained_intron Mus_musculus 0 582
ENSMUST00000118188 Gm15033-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000150835 Snrpb-004 retained_intron Mus_musculus 0 292
ENSMUST00000120366 Gm14881-001 processed_pseudogene Mus_musculus 7.9874e-44 182

Loading