C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027404 Snrpb 10090 - 2:130171414-130179403 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103199 Snrpb-001 130171635-130179403 protein_coding
  ENSMUST00000139225 Snrpb-003 130171414-130179303 retained_intron
  ENSMUST00000147570 Snrpb-002 130171787-130179403 processed_transcript
  ENSMUST00000150835 Snrpb-004 130176852-130179334 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103199ENSMUST00000147570ENSMUST00000150835
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103199 81.036±11.46 98.530±23.60 107.802±23.48 151.944±55.65 79.301±26.86 81.067±15.40 49.774±11.84 84.852±7.09 98.631±62.24 100.599±6.53 81.073±5.61 151.934±67.63 224.504±242.61 59.889±18.92
ENSMUST00000147570 N/A 84.935±25.26 N/A N/A 69.927±11.38 48.099±10.02 N/A 26.006±0.00 13.936±5.30 68.866±8.77 N/A 108.013±49.46 N/A N/A
ENSMUST00000150835 N/A 424.613±162.93 N/A N/A N/A N/A N/A N/A 77.199±24.44 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FT CIL_0000FT_0002 CGP 2:130112416-130179403

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0034709 ISS methylosome
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071208 IDA histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011125 snrpb small nuclear ribonucleoprotein polypeptides B and B1 protein_coding Danio_rerio
ENSG00000125835 SNRPB small nuclear ribonucleoprotein polypeptides B and B1 protein_coding Homo_sapiens

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