C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000FT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166948-ENSG00000125835 CGP 9606 20:2380908-2470853
GeneTranscriptPositionBiotype
ENSG00000125835 (SNRPB)
small nuclear ribonucleoprotein polypeptides B and B1
ENST00000339610 (SNRPB-201) 2461643-2470819 protein_coding
ENST00000381342 (SNRPB-001) 2461634-2470853 protein_coding
ENST00000438552 (SNRPB-002) 2461634-2470853 protein_coding
ENST00000474384 (SNRPB-003) 2461660-2470732 nonsense_mediated_decay
ENSG00000166948 (TGM6)
transglutaminase 6
ENST00000202625 (TGM6-001) 2380908-2432753 protein_coding
ENST00000381423 (TGM6-002) 2380908-2432753 protein_coding
ENST00000477505 (TGM6-003) 2394452-2400444 processed_transcript
ENSG00000256566 (RP4-734P14.4)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000456213}
ENST00000461548 (RP4-734P14.4-001) 2467212-2508907 nonsense_mediated_decay
CIL_0000FT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027403-ENSMUSG00000027404 CGP 10090 2:130112416-130179403
GeneTranscriptPositionBiotype
ENSMUSG00000027403 (Tgm6)
transglutaminase 6
ENSMUST00000028888 (Tgm6-001) 130123275-130154232 protein_coding
ENSMUST00000140947 (Tgm6-003) 130112416-130154232 processed_transcript
ENSMUST00000147616 (Tgm6-002) 130123275-130154232 processed_transcript
ENSMUSG00000027404 (Snrpb)
small nuclear ribonucleoprotein B
ENSMUST00000103199 (Snrpb-001) 130171635-130179403 protein_coding
ENSMUST00000139225 (Snrpb-003) 130171414-130179303 retained_intron
ENSMUST00000147570 (Snrpb-002) 130171787-130179403 processed_transcript
ENSMUST00000150835 (Snrpb-004) 130176852-130179334 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FT_0001ENSG00000125835ENST00000339610ENST00000381342ENST00000438552ENST00000474384ENSG00000166948ENST00000202625ENST00000381423ENST00000477505ENSG00000256566ENST00000461548CIL_0000FT_0002ENSMUSG00000027403ENSMUST00000028888ENSMUST00000140947ENSMUST00000147616ENSMUSG00000027404ENSMUST00000103199ENSMUST00000139225ENSMUST00000147570ENSMUST00000150835
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FT_0001ENSG00000125835ENST00000339610ENST00000381342ENST00000438552ENSG00000166948ENST00000202625ENST00000381423ENST00000477505ENSG00000256566ENST00000461548CIL_0000FT_0002ENSMUSG00000027403ENSMUST00000028888ENSMUST00000140947ENSMUST00000147616ENSMUSG00000027404ENSMUST00000103199ENSMUST00000147570ENSMUST00000150835
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125835 ENST00000339610 39.626±0.00 80.363±0.00 N/A 22.747±14.23 20.922±8.78 23.017±13.02 14.965±11.64 25.265±20.30 36.904±0.00 60.170±54.94 24.832±15.00 97.085±48.62 101.943±16.62 65.635±3.20
ENST00000381342 N/A N/A N/A N/A N/A N/A N/A N/A 5.810±0.00 N/A N/A N/A N/A N/A
ENST00000438552 24.760±0.00 36.739±0.00 N/A 18.652±0.00 13.478±0.00 19.506±0.00 N/A N/A N/A N/A N/A 201.950±180.64 63.847±43.06 43.277±12.31
ENST00000474384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166948 ENST00000202625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A
ENST00000381423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00
ENST00000477505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A N/A
ENSG00000256566 ENST00000461548 N/A N/A 1.301±0.00 N/A N/A N/A 0.852±0.00 N/A N/A 2.197±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027403 ENSMUST00000028888 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A 0.180±0.00 0.028±0.00
ENSMUST00000140947 0.026±0.00 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.037±0.00 0.035±0.00 0.041±0.03 0.067±0.04
ENSMUST00000147616 0.012±0.00 N/A N/A 0.088±0.00 N/A 0.017±0.00 N/A N/A 0.021±0.00 0.028±0.00 N/A 0.037±0.03 0.052±0.04 0.184±0.05
ENSMUSG00000027404 ENSMUST00000103199 81.036±11.46 98.530±23.60 107.802±23.48 151.944±55.65 79.301±26.86 81.067±15.40 49.774±11.84 84.852±7.09 98.631±62.24 100.599±6.53 81.073±5.61 151.934±67.63 224.504±242.61 59.889±18.92
ENSMUST00000139225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147570 N/A 84.935±25.26 N/A N/A 69.927±11.38 48.099±10.02 N/A 26.006±0.00 13.936±5.30 68.866±8.77 N/A 108.013±49.46 N/A N/A
ENSMUST00000150835 N/A 424.613±162.93 N/A N/A N/A N/A N/A N/A 77.199±24.44 N/A N/A N/A N/A N/A

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