C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptides B and B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339610 SNRPB-201 ENSG00000125835 9606 - 20:2461643-2470819 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339610
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339610 39.626±0.00 80.363±0.00 22.747±14.23 20.922±8.78 23.017±13.02 14.965±11.64 25.265±20.30 36.904±0.00 60.170±54.94 24.832±15.00 97.085±48.62 101.943±16.62 65.635±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FT CIL_0000FT_0001 CGP 20:2380908-2470853
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103199 Snrpb-001 protein_coding Mus_musculus 0 1229
ENSMUST00000147570 Snrpb-002 processed_transcript Mus_musculus 0 821
ENSMUST00000139225 Snrpb-003 retained_intron Mus_musculus 0 582
ENSMUST00000118188 Gm15033-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000098402 Snrpn-202 protein_coding Mus_musculus 0 542
ENSMUST00000059305 Snrpn-201 protein_coding Mus_musculus 0 542
ENSMUST00000150835 Snrpb-004 retained_intron Mus_musculus 0 292
ENSMUST00000120366 Gm14881-001 processed_pseudogene Mus_musculus 8.96831e-44 182

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