C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377943 SNRPB2-002 ENSG00000125870 9606 + 20:16729961-16741776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377943 11.011±0.00 9.276±0.00 1.848±0.00 7.941±5.38 9.189±2.82 4.781±2.88 6.135±0.00 3.643±0.17 1.669±0.19 2.077±0.01 3.500±2.72 10.185±5.44 6.102±2.03 13.068±7.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DH CIL_0002DH_0001 CGP 20:16729961-16770062

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005686 TAS U2 snRNP
GO:0005730 IDA nucleolus
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0017069 IEA snRNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008477 Snrpb2-001 protein_coding Mus_musculus 0 946
ENSMUST00000118008 Gm12697-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000134091 Snrpb2-003 retained_intron Mus_musculus 0 592
ENSMUST00000127760 Snrpb2-005 retained_intron Mus_musculus 0 558
ENSMUST00000126763 Snrpb2-004 protein_coding Mus_musculus 0 558
ENSMUST00000139114 Snrpb2-002 retained_intron Mus_musculus 0 359

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