C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein R
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478691 HNRNPR-004 ENSG00000125944 9606 - 1:23304688-23344336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLungMuscleOvaryTestisENST00000478691
Transcript ID Adrenal Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000478691 1.916±0.00 1.676±0.00 0.832±0.15 1.329±0.00 2.518±0.00 0.446±0.00 2.431±0.14 2.140±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 NAS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 NAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148843 Hnrnpr-001 protein_coding Mus_musculus 0 3877
ENSMUST00000084219 Hnrnpr-007 protein_coding Mus_musculus 0 3775
ENSMUST00000131671 Hnrnpr-003 protein_coding Mus_musculus 0 3651
ENSMUST00000105850 Hnrnpr-002 protein_coding Mus_musculus 0 3474
ENSMUST00000191249 RP23-395H12.1-001 processed_pseudogene Mus_musculus 0 2344
ENSMUST00000182327 Hnrnpr-010 retained_intron Mus_musculus 0 2318
ENSMUST00000134524 Hnrnpr-006 protein_coding Mus_musculus 0 867
ENSMUST00000145282 Hnrnpr-008 nonsense_mediated_decay Mus_musculus 0 802
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 488
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 488
ENSMUST00000125696 Hnrnpr-005 protein_coding Mus_musculus 0 479
ENSDART00000132186 syncrip-002 protein_coding Danio_rerio 0 379
ENSMUST00000153505 Hnrnpr-009 retained_intron Mus_musculus 0 363

Loading