C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein R
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374612 HNRNPR-003 ENSG00000125944 9606 - 1:23309786-23344322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374612
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374612 15.363±0.00 15.813±0.00 5.450±0.00 7.222±4.18 7.129±1.23 9.884±3.37 3.626±2.08 6.190±0.89 6.092±1.25 7.968±0.00 1.064±0.00 10.992±0.00 9.788±2.77 14.089±7.45

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 NAS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 NAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148843 Hnrnpr-001 protein_coding Mus_musculus 0 3976
ENSMUST00000105850 Hnrnpr-002 protein_coding Mus_musculus 0 3958
ENSMUST00000131671 Hnrnpr-003 protein_coding Mus_musculus 0 3513
ENSMUST00000084219 Hnrnpr-007 protein_coding Mus_musculus 0 3491
ENSMUST00000191249 RP23-395H12.1-001 processed_pseudogene Mus_musculus 0 2385
ENSMUST00000182327 Hnrnpr-010 retained_intron Mus_musculus 0 1914
ENSMUST00000134524 Hnrnpr-006 protein_coding Mus_musculus 0 1179
ENSMUST00000145282 Hnrnpr-008 nonsense_mediated_decay Mus_musculus 0 1179
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 529
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 529
ENSMUST00000125696 Hnrnpr-005 protein_coding Mus_musculus 0 481
ENSDART00000132186 syncrip-002 protein_coding Danio_rerio 0 422
ENSMUST00000156259 Hnrnpr-004 protein_coding Mus_musculus 0 407
ENSMUST00000153505 Hnrnpr-009 retained_intron Mus_musculus 0 363

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