C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein R
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374616 HNRNPR-002 ENSG00000125944 9606 - 1:23309783-23344310 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000374616
Transcript ID Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000374616 1.419±0.00 5.777±0.97 5.197±0.00 1.278±0.00 6.086±0.00 1.684±0.56 13.830±5.26 10.623±4.48 14.338±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 NAS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 NAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105850 Hnrnpr-002 protein_coding Mus_musculus 0 3925
ENSMUST00000148843 Hnrnpr-001 protein_coding Mus_musculus 0 3912
ENSMUST00000131671 Hnrnpr-003 protein_coding Mus_musculus 0 3474
ENSMUST00000084219 Hnrnpr-007 protein_coding Mus_musculus 0 3450
ENSMUST00000191249 RP23-395H12.1-001 processed_pseudogene Mus_musculus 0 2344
ENSMUST00000182327 Hnrnpr-010 retained_intron Mus_musculus 0 1916
ENSMUST00000145282 Hnrnpr-008 nonsense_mediated_decay Mus_musculus 0 1194
ENSMUST00000134524 Hnrnpr-006 protein_coding Mus_musculus 0 1173
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 488
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 488
ENSMUST00000125696 Hnrnpr-005 protein_coding Mus_musculus 0 481
ENSMUST00000156259 Hnrnpr-004 protein_coding Mus_musculus 0 405
ENSDART00000132186 syncrip-002 protein_coding Danio_rerio 0 379
ENSMUST00000153505 Hnrnpr-009 retained_intron Mus_musculus 0 363

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