C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ERGIC and golgi 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125991 ERGIC3 9606 + 20:35542021-35557634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000279052 ERGIC3-005 35542082-35545404 retained_intron
  ENST00000348547 ERGIC3-001 35542021-35557634 protein_coding
  ENST00000357394 ERGIC3-003 35542038-35557634 protein_coding
  ENST00000411577 ERGIC3-011 35542116-35543909 protein_coding
  ENST00000413587 ERGIC3-017 35542130-35557066 protein_coding
  ENST00000416206 ERGIC3-006 35542102-35557546 protein_coding
  ENST00000438317 ERGIC3-010 35542079-35547471 nonsense_mediated_decay
  ENST00000442139 ERGIC3-008 35556043-35557455 protein_coding
  ENST00000447986 ERGIC3-004 35542069-35549783 retained_intron
  ENST00000451605 ERGIC3-015 35556095-35557633 protein_coding
  ENST00000461043 ERGIC3-012 35542192-35548865 retained_intron
  ENST00000465298 ERGIC3-020 35554857-35557096 retained_intron
  ENST00000475211 ERGIC3-021 35554916-35556560 retained_intron
  ENST00000482338 ERGIC3-014 35547487-35556432 processed_transcript
  ENST00000486268 ERGIC3-018 35542079-35543139 processed_transcript
  ENST00000488384 ERGIC3-016 35556610-35557634 retained_intron
  ENST00000488935 ERGIC3-009 35556579-35557450 processed_transcript
  ENST00000489071 ERGIC3-019 35547262-35548979 processed_transcript
  ENST00000496172 ERGIC3-013 35542443-35556262 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348547ENST00000357394ENST00000461043ENST00000496172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348547 76.015±0.00 109.139±0.00 4.624±0.00 16.288±9.40 63.157±45.45 49.781±40.83 19.476±16.09 65.965±44.50 46.484±33.43 63.214±50.73 24.259±21.19 123.157±63.86 160.716±16.12 140.937±10.14
ENST00000357394 N/A N/A N/A 12.548±4.56 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461043 N/A N/A N/A N/A 16.583±0.00 4.091±0.00 2.571±0.00 N/A N/A N/A N/A 183.384±0.00 243.785±0.00 234.328±0.00
ENST00000496172 22.674±0.00 N/A N/A 14.449±0.00 N/A 11.861±8.56 3.166±0.00 N/A N/A N/A 4.551±0.00 N/A N/A 56.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0005FV CIL_0005FV_0001 CGP 20:35523186-35557634

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038074 ergic3 ERGIC and golgi 3 protein_coding Danio_rerio
ENSMUSG00000005881 Ergic3 ERGIC and golgi 3 protein_coding Mus_musculus

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