C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ERGIC and golgi 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348547 ERGIC3-001 ENSG00000125991 9606 + 20:35542021-35557634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348547 76.015±0.00 109.139±0.00 4.624±0.00 16.288±9.40 63.157±45.45 49.781±40.83 19.476±16.09 65.965±44.50 46.484±33.43 63.214±50.73 24.259±21.19 123.157±63.86 160.716±16.12 140.937±10.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0005FV CIL_0005FV_0001 CGP 20:35523186-35557634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006035 Ergic3-001 protein_coding Mus_musculus 0 1687
ENSMUST00000088650 Ergic3-002 protein_coding Mus_musculus 0 1507
ENSMUST00000155370 Ergic3-006 protein_coding Mus_musculus 0 965
ENSMUST00000142859 Ergic3-009 protein_coding Mus_musculus 0 941
ENSMUST00000144707 Ergic3-003 retained_intron Mus_musculus 0 695
ENSMUST00000150970 Ergic3-004 processed_transcript Mus_musculus 0 582
ENSMUST00000152568 Ergic3-008 retained_intron Mus_musculus 0 348
ENSMUST00000130793 Ergic3-010 processed_transcript Mus_musculus 0 270
ENSMUST00000137545 Ergic3-005 retained_intron Mus_musculus 0 244
ENSMUST00000149381 Ergic3-007 retained_intron Mus_musculus 0 200
ENSDART00000123923 DHX29-202 protein_coding Danio_rerio 0.000007 57
ENSDART00000129467 DHX29-201 protein_coding Danio_rerio 0.000007 57

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