C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ERGIC and golgi 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005881 Ergic3 10090 + 2:156008045-156018279 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006035 Ergic3-001 156008045-156018279 protein_coding
  ENSMUST00000088650 Ergic3-002 156008106-156018279 protein_coding
  ENSMUST00000130793 Ergic3-010 156017215-156018096 processed_transcript
  ENSMUST00000137545 Ergic3-005 156017546-156018279 retained_intron
  ENSMUST00000142859 Ergic3-009 156008619-156017638 protein_coding
  ENSMUST00000144707 Ergic3-003 156008223-156011233 retained_intron
  ENSMUST00000149381 Ergic3-007 156017648-156018277 retained_intron
  ENSMUST00000150970 Ergic3-004 156016509-156018150 processed_transcript
  ENSMUST00000152568 Ergic3-008 156017494-156018279 retained_intron
  ENSMUST00000155370 Ergic3-006 156010447-156018087 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006035ENSMUST00000142859ENSMUST00000144707ENSMUST00000150970ENSMUST00000155370
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006035 114.122±7.35 105.930±11.21 74.246±16.94 47.101±25.82 66.805±13.51 98.864±4.93 35.195±4.31 124.730±3.59 61.135±9.75 65.686±5.89 20.061±1.18 114.405±24.28 68.915±21.32 136.066±58.46
ENSMUST00000142859 N/A N/A N/A 65.709±27.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144707 N/A N/A N/A 86.004±0.00 N/A N/A N/A N/A N/A N/A N/A 198.256±0.00 138.049±17.05 83.017±0.00
ENSMUST00000150970 N/A N/A N/A N/A 55.222±6.99 75.110±7.94 N/A N/A N/A 55.306±1.23 N/A 133.134±37.31 N/A N/A
ENSMUST00000155370 N/A N/A N/A N/A 48.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FV CIL_0005FV_0002 CGP 2:155973279-156018279

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038074 ergic3 ERGIC and golgi 3 protein_coding Danio_rerio
ENSG00000125991 ERGIC3 ERGIC and golgi 3 protein_coding Homo_sapiens

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