C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin protein ligase E3 component n-recognin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127481 UBR4 9606 - 1:19074506-19210276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375218 UBR4-005 19111640-19118849 protein_coding
  ENST00000375224 UBR4-004 19074514-19104916 protein_coding
  ENST00000375225 UBR4-002 19074510-19082240 protein_coding
  ENST00000375254 UBR4-001 19074506-19210276 protein_coding
  ENST00000417040 UBR4-007 19121213-19168055 protein_coding
  ENST00000419533 UBR4-008 19150924-19177745 retained_intron
  ENST00000425413 UBR4-006 19121200-19151700 protein_coding
  ENST00000459947 UBR4-003 19074518-19081306 retained_intron
  ENST00000465036 UBR4-014 19144852-19146128 processed_transcript
  ENST00000466969 UBR4-012 19110487-19112687 processed_transcript
  ENST00000467272 UBR4-011 19093361-19100126 processed_transcript
  ENST00000475973 UBR4-013 19124477-19127701 processed_transcript
  ENST00000483922 UBR4-010 19094095-19095922 retained_intron
  ENST00000486515 UBR4-009 19074567-19077827 processed_transcript
  ENST00000492606 UBR4-015 19092733-19093440 retained_intron
  ENST00000494503 UBR4-016 19106566-19110558 processed_transcript
  ENST00000497018 UBR4-017 19153839-19155039 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375224ENST00000375254ENST00000486515
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375224 8.645±0.00 14.474±0.00 N/A 9.090±5.39 9.402±0.00 11.948±0.00 8.958±0.00 9.949±0.00 5.324±0.00 16.739±0.00 42.959±0.00 18.577±3.94 8.936±3.16 26.477±13.66
ENST00000375254 3.800±0.00 2.444±0.00 6.366±0.00 3.991±0.59 4.227±1.19 2.420±0.00 3.493±0.51 6.805±3.10 6.159±4.07 5.443±2.99 7.391±0.00 4.672±2.74 3.020±0.41 11.495±5.27
ENST00000486515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 151.367±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009549 ubr4 ubiquitin protein ligase E3 component n-recognin 4 protein_coding Danio_rerio
ENSMUSG00000066036 Ubr4 ubiquitin protein ligase E3 component n-recognin 4 protein_coding Mus_musculus

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