C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375254 UBR4-001 ENSG00000127481 9606 - 1:19074506-19210276 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375254 3.800±0.00 2.444±0.00 6.366±0.00 3.991±0.59 4.227±1.19 2.420±0.00 3.493±0.51 6.805±3.10 6.159±4.07 5.443±2.99 7.391±0.00 4.672±2.74 3.020±0.41 11.495±5.27

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097822 Ubr4-001 protein_coding Mus_musculus 0 19570
ENSMUST00000165860 Ubr4-201 protein_coding Mus_musculus 0 9003
ENSMUST00000147999 Ubr4-004 protein_coding Mus_musculus 0 4935
ENSMUST00000129949 Ubr4-002 protein_coding Mus_musculus 0 4455
ENSDART00000156701 ubr4-202 protein_coding Danio_rerio 0 3843
ENSDART00000033970 ubr4-001 protein_coding Danio_rerio 0 3843
ENSDART00000024846 ubr4-201 protein_coding Danio_rerio 0 3581
ENSMUST00000133220 Ubr4-003 processed_transcript Mus_musculus 0 1762
ENSMUST00000145273 Ubr4-008 retained_intron Mus_musculus 0 800
ENSMUST00000145659 Ubr4-009 processed_transcript Mus_musculus 0 625
ENSMUST00000135534 Ubr4-011 retained_intron Mus_musculus 0 508
ENSMUST00000141327 Ubr4-010 retained_intron Mus_musculus 0 488
ENSMUST00000129779 Ubr4-006 protein_coding Mus_musculus 0 433
ENSMUST00000136230 Ubr4-007 retained_intron Mus_musculus 0 366
ENSMUST00000149995 Ubr4-005 retained_intron Mus_musculus 0 252
ENSDART00000131914 ubr4-003 retained_intron Danio_rerio 0 193

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