C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127663 KDM4B 9606 + 19:4969113-5153595 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000159111 KDM4B-001 4969121-5153595 protein_coding
  ENST00000381759 KDM4B-011 4969132-5113340 protein_coding
  ENST00000536461 KDM4B-002 5016325-5153105 protein_coding
  ENST00000588166 KDM4B-003 5135536-5138470 processed_transcript
  ENST00000588337 KDM4B-004 4969114-5041181 protein_coding
  ENST00000588361 KDM4B-012 5082452-5141503 protein_coding
  ENST00000588961 KDM4B-008 5080688-5110734 processed_transcript
  ENST00000589104 KDM4B-007 5070618-5151924 retained_intron
  ENST00000592159 KDM4B-010 5112358-5119682 processed_transcript
  ENST00000592175 KDM4B-005 5046998-5082437 processed_transcript
  ENST00000611640 KDM4B-201 4969113-5153595 protein_coding
  ENST00000624683 KDM4B-009 5074091-5079166 TEC

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000159111ENST00000381759ENST00000536461ENST00000589104ENST00000611640ENST00000624683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000159111 N/A 3.674±0.00 0.525±0.00 2.684±1.70 4.989±0.00 1.479±0.58 1.547±1.45 5.382±0.00 1.964±0.37 0.366±0.00 7.674±6.50 3.161±1.20 5.290±1.26 2.904±1.22
ENST00000381759 N/A N/A N/A N/A 1.123±0.00 N/A 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000536461 N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A 2.394±0.00 4.106±0.00 2.621±0.00
ENST00000589104 N/A N/A N/A N/A 1.084±0.00 N/A N/A N/A N/A N/A 1.272±0.00 1.309±0.00 N/A 3.444±0.00
ENST00000611640 3.626±0.00 1.691±0.00 N/A 1.546±0.00 1.691±0.00 N/A 3.001±0.00 2.718±0.00 2.902±0.00 1.763±0.00 2.048±0.00 3.004±2.76 3.464±1.45 3.336±0.00
ENST00000624683 N/A N/A N/A N/A N/A N/A N/A 1.361±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GV CIL_0005GV_0002 CGP 19:4903080-5153595
CIL_0005ON CIL_0005ON_0001 CGP 19:4969113-5340803

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0030054 IDA cell junction
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042729 kdm4b lysine (K)-specific demethylase 4B protein_coding Danio_rerio
ENSMUSG00000024201 Kdm4b lysine (K)-specific demethylase 4B protein_coding Mus_musculus

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