C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000159111 KDM4B-001 ENSG00000127663 9606 + 19:4969121-5153595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000159111
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000159111 3.674±0.00 0.525±0.00 2.684±1.70 4.989±0.00 1.479±0.58 1.547±1.45 5.382±0.00 1.964±0.37 0.366±0.00 7.674±6.50 3.161±1.20 5.290±1.26 2.904±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GV CIL_0005GV_0002 CGP 19:4903080-5153595
CIL_0005ON CIL_0005ON_0001 CGP 19:4969113-5340803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0030054 IDA cell junction
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086835 Kdm4b-002 protein_coding Mus_musculus 0 1279
ENSMUST00000025036 Kdm4b-001 protein_coding Mus_musculus 0 1279
ENSMUST00000141507 Kdm4b-003 protein_coding Mus_musculus 0 1064
ENSDART00000034084 kdm4b-201 protein_coding Danio_rerio 0 702
ENSDART00000128161 kdm4b-001 protein_coding Danio_rerio 0 702
ENSMUST00000132363 Kdm4b-005 processed_transcript Mus_musculus 0 313

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