C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ON_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127663-ENSG00000105426 CGP 9606 19:4969113-5340803
GeneTranscriptPositionBiotype
ENSG00000127663 (KDM4B)
lysine (K)-specific demethylase 4B 		ENST00000159111 (KDM4B-001) 4969121-5153595 protein_coding
ENST00000381759 (KDM4B-011) 4969132-5113340 protein_coding
ENST00000536461 (KDM4B-002) 5016325-5153105 protein_coding
ENST00000588166 (KDM4B-003) 5135536-5138470 processed_transcript
ENST00000588337 (KDM4B-004) 4969114-5041181 protein_coding
ENST00000588361 (KDM4B-012) 5082452-5141503 protein_coding
ENST00000588961 (KDM4B-008) 5080688-5110734 processed_transcript
ENST00000589104 (KDM4B-007) 5070618-5151924 retained_intron
ENST00000592159 (KDM4B-010) 5112358-5119682 processed_transcript
ENST00000592175 (KDM4B-005) 5046998-5082437 processed_transcript
ENST00000611640 (KDM4B-201) 4969113-5153595 protein_coding
ENST00000624683 (KDM4B-009) 5074091-5079166 TEC
ENSG00000239524 (RPL32P34)
ribosomal protein L32 pseudogene 34 		ENST00000486380 (RPL32P34-001) 5277734-5278133 processed_pseudogene
ENSG00000267550 (CTC-482H14.5)
 ENST00000592429 (CTC-482H14.5-001) 5178119-5178464 antisense
ENSG00000274447 (LLNLR-304G9.1)
 ENST00000619774 (LLNLR-304G9.1-001) 5294247-5294696 antisense
CIL_0005ON_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024201-ENSMUSG00000013236 CGP 10090 17:56326062-56476483
GeneTranscriptPositionBiotype
ENSMUSG00000013236 (Ptprs)
protein tyrosine phosphatase, receptor type, S 		ENSMUST00000067538 (Ptprs-001) 56412433-56476483 protein_coding
ENSMUST00000086828 (Ptprs-002) 56412431-56462216 protein_coding
ENSMUST00000143018 (Ptprs-003) 56422237-56476369 processed_transcript
ENSMUSG00000024201 (Kdm4b)
lysine (K)-specific demethylase 4B 		ENSMUST00000025036 (Kdm4b-001) 56326074-56402864 protein_coding
ENSMUST00000086835 (Kdm4b-002) 56326091-56402859 protein_coding
ENSMUST00000132363 (Kdm4b-005) 56372295-56386119 processed_transcript
ENSMUST00000139679 (Kdm4b-004) 56326062-56356056 protein_coding
ENSMUST00000141507 (Kdm4b-003) 56393920-56402870 protein_coding
ENSMUST00000147489 (Kdm4b-006) 56393517-56393785 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ON_0001ENSG00000127663ENST00000159111ENST00000381759ENST00000536461ENST00000588166ENST00000588337ENST00000588361ENST00000588961ENST00000589104ENST00000592159ENST00000592175ENST00000611640ENST00000624683ENSG00000239524ENST00000486380ENSG00000267550ENST00000592429ENSG00000274447ENST00000619774CIL_0005ON_0002ENSMUSG00000013236ENSMUST00000067538ENSMUST00000086828ENSMUST00000143018ENSMUSG00000024201ENSMUST00000025036ENSMUST00000086835ENSMUST00000132363ENSMUST00000139679ENSMUST00000141507ENSMUST00000147489
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ON_0001ENSG00000127663ENST00000159111ENST00000381759ENST00000536461ENST00000589104ENST00000611640ENST00000624683ENSG00000239524ENST00000486380ENSG00000267550ENST00000592429ENSG00000274447ENST00000619774CIL_0005ON_0002ENSMUSG00000013236ENSMUST00000067538ENSMUST00000086828ENSMUSG00000024201ENSMUST00000025036ENSMUST00000086835ENSMUST00000139679ENSMUST00000141507
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127663 ENST00000159111 N/A 3.674±0.00 0.525±0.00 2.684±1.70 4.989±0.00 1.479±0.58 1.547±1.45 5.382±0.00 1.964±0.37 0.366±0.00 7.674±6.50 3.161±1.20 5.290±1.26 2.904±1.22
ENST00000381759 N/A N/A N/A N/A 1.123±0.00 N/A 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000536461 N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A 2.394±0.00 4.106±0.00 2.621±0.00
ENST00000588166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589104 N/A N/A N/A N/A 1.084±0.00 N/A N/A N/A N/A N/A 1.272±0.00 1.309±0.00 N/A 3.444±0.00
ENST00000592159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611640 3.626±0.00 1.691±0.00 N/A 1.546±0.00 1.691±0.00 N/A 3.001±0.00 2.718±0.00 2.902±0.00 1.763±0.00 2.048±0.00 3.004±2.76 3.464±1.45 3.336±0.00
ENST00000624683 N/A N/A N/A N/A N/A N/A N/A 1.361±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000239524 ENST00000486380 0.096±0.00 N/A 1.153±0.00 0.115±0.00 0.212±0.06 N/A 0.270±0.00 N/A N/A N/A N/A N/A N/A 0.448±0.00
ENSG00000267550 ENST00000592429 N/A 0.111±0.00 N/A 0.188±0.00 0.174±0.00 0.329±0.28 N/A 0.286±0.00 N/A N/A N/A 0.157±0.00 N/A N/A
ENSG00000274447 ENST00000619774 N/A 0.436±0.00 N/A 0.130±0.00 N/A N/A N/A N/A N/A 0.160±0.00 N/A N/A 0.133±0.03 0.657±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000013236 ENSMUST00000067538 33.575±27.64 75.683±26.65 54.246±7.56 106.294±12.06 12.779±5.13 10.239±2.61 7.137±3.83 3.894±1.57 2.407±1.78 21.047±3.16 1.449±0.60 46.228±24.62 2.352±1.48 7.202±3.66
ENSMUST00000086828 15.127±7.70 N/A 12.182±0.38 90.411±39.89 8.762±5.77 7.636±1.50 4.256±2.51 3.744±0.65 1.698±1.30 11.055±1.00 1.355±0.45 21.775±5.11 1.902±0.43 3.145±1.03
ENSMUST00000143018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024201 ENSMUST00000025036 8.916±0.81 7.462±1.80 7.985±1.18 16.431±9.98 8.868±4.51 8.367±2.69 3.411±0.87 4.896±0.54 2.198±0.50 6.251±1.78 3.863±0.38 12.608±5.75 5.082±2.55 1.716±0.40
ENSMUST00000086835 N/A N/A N/A N/A 1.296±0.00 N/A N/A N/A 0.454±0.00 N/A 0.983±0.00 N/A N/A N/A
ENSMUST00000132363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139679 N/A 16.764±3.59 N/A 14.431±0.00 N/A N/A N/A 4.636±0.00 2.475±0.38 8.118±0.00 N/A 13.935±4.52 7.194±1.17 N/A
ENSMUST00000141507 2.779±0.20 7.200±1.25 3.923±0.46 6.470±0.00 2.197±0.00 4.083±0.70 2.333±0.33 1.868±0.16 1.219±0.29 3.623±0.93 N/A 5.511±1.71 2.141±0.84 3.495±0.52
ENSMUST00000147489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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