C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024201 Kdm4b 10090 + 17:56326062-56402870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025036 Kdm4b-001 56326074-56402864 protein_coding
  ENSMUST00000086835 Kdm4b-002 56326091-56402859 protein_coding
  ENSMUST00000132363 Kdm4b-005 56372295-56386119 processed_transcript
  ENSMUST00000139679 Kdm4b-004 56326062-56356056 protein_coding
  ENSMUST00000141507 Kdm4b-003 56393920-56402870 protein_coding
  ENSMUST00000147489 Kdm4b-006 56393517-56393785 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025036ENSMUST00000086835ENSMUST00000139679ENSMUST00000141507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025036 8.916±0.81 7.462±1.80 7.985±1.18 16.431±9.98 8.868±4.51 8.367±2.69 3.411±0.87 4.896±0.54 2.198±0.50 6.251±1.78 3.863±0.38 12.608±5.75 5.082±2.55 1.716±0.40
ENSMUST00000086835 N/A N/A N/A N/A 1.296±0.00 N/A N/A N/A 0.454±0.00 N/A 0.983±0.00 N/A N/A N/A
ENSMUST00000139679 N/A 16.764±3.59 N/A 14.431±0.00 N/A N/A N/A 4.636±0.00 2.475±0.38 8.118±0.00 N/A 13.935±4.52 7.194±1.17 N/A
ENSMUST00000141507 2.779±0.20 7.200±1.25 3.923±0.46 6.470±0.00 2.197±0.00 4.083±0.70 2.333±0.33 1.868±0.16 1.219±0.29 3.623±0.93 N/A 5.511±1.71 2.141±0.84 3.495±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GV CIL_0005GV_0003 CGP 17:56303321-56402870
CIL_0005ON CIL_0005ON_0002 CGP 17:56326062-56476483

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005925 IEA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0030054 IEA cell junction
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042729 kdm4b lysine (K)-specific demethylase 4B protein_coding Danio_rerio
ENSG00000127663 KDM4B lysine (K)-specific demethylase 4B protein_coding Homo_sapiens

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