C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128606 LRRC17 9606 + 7:102912991-102944949 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249377 LRRC17-001 102913005-102944949 protein_coding
  ENST00000339431 LRRC17-002 102912991-102944949 protein_coding
  ENST00000455453 LRRC17-004 102933230-102934226 protein_coding
  ENST00000485478 LRRC17-005 102936184-102944670 processed_transcript
  ENST00000498487 LRRC17-003 102913000-102933450 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249377ENST00000339431ENST00000455453ENST00000485478
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249377 N/A 0.740±0.00 N/A N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000339431 0.250±0.00 0.426±0.00 0.244±0.08 0.914±0.75 0.577±0.32 0.762±0.12 0.415±0.32 1.099±1.02 0.421±0.00 0.105±0.00 8.365±9.00 0.376±0.19 4.923±0.00
ENST00000455453 N/A N/A N/A N/A N/A N/A 0.502±0.00 N/A N/A N/A N/A N/A N/A
ENST00000485478 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0001 VISTA 7:102540897-103142421
CIL_0005CF CIL_0005CF_0001 CGP 7:102748971-103074843
CIL_0005CK CIL_0005CK_0001 CGP 7:102813230-103074843
CIL_0005CL CIL_0005CL_0001 CGP 7:102912991-103099764

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005615 ISS extracellular space
GO:0045671 ISS negative regulation of osteoclast differentiation
GO:0048539 ISS bone marrow development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037960 lrrc17 leucine rich repeat containing 17 protein_coding Danio_rerio
ENSMUSG00000039883 Lrrc17 leucine rich repeat containing 17 protein_coding Mus_musculus

Loading