C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005CF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000222011-ENSG00000161040 CGP 9606 7:102748971-103074843
GeneTranscriptPositionBiotype
ENSG00000128606 (LRRC17)
leucine rich repeat containing 17 		ENST00000249377 (LRRC17-001) 102913005-102944949 protein_coding
ENST00000339431 (LRRC17-002) 102912991-102944949 protein_coding
ENST00000455453 (LRRC17-004) 102933230-102934226 protein_coding
ENST00000485478 (LRRC17-005) 102936184-102944670 processed_transcript
ENST00000498487 (LRRC17-003) 102913000-102933450 processed_transcript
ENSG00000161040 (FBXL13)
F-box and leucine-rich repeat protein 13 		ENST00000313221 (FBXL13-001) 102813233-103074568 protein_coding
ENST00000379305 (FBXL13-003) 102813230-103074833 protein_coding
ENST00000379308 (FBXL13-201) 102813236-103074843 protein_coding
ENST00000436908 (FBXL13-006) 102813233-103050059 protein_coding
ENST00000440067 (FBXL13-008) 103025197-103074811 protein_coding
ENST00000448002 (FBXL13-002) 102813230-103074839 nonsense_mediated_decay
ENST00000455112 (FBXL13-005) 102813275-103074725 protein_coding
ENST00000456695 (FBXL13-007) 102813233-103074725 protein_coding
ENST00000468216 (FBXL13-012) 102926283-102933735 processed_transcript
ENST00000471074 (FBXL13-009) 102963538-103074796 processed_transcript
ENST00000477915 (FBXL13-010) 102883572-102973219 processed_transcript
ENST00000480422 (FBXL13-011) 102813238-102816271 processed_transcript
ENSG00000222011 (FAM185A)
family with sequence similarity 185, member A 		ENST00000409231 (FAM185A-003) 102749028-102808840 protein_coding
ENST00000413034 (FAM185A-009) 102749208-102808402 protein_coding
ENST00000418198 (FAM185A-004) 102749037-102757876 protein_coding
ENST00000420217 (FAM185A-001) 102749010-102809224 nonsense_mediated_decay
ENST00000442873 (FAM185A-002) 102748971-102809225 nonsense_mediated_decay
ENST00000481697 (FAM185A-006) 102748971-102779810 processed_transcript
ENST00000487807 (FAM185A-007) 102748978-102787370 processed_transcript
ENST00000496790 (FAM185A-005) 102749442-102755399 processed_transcript
ENSG00000230257 (NFE4)
nuclear factor, erythroid 4 		ENST00000420058 (NFE4-001) 102973522-102988856 antisense
ENSG00000236226 (RP11-645N11.3)
 ENST00000447336 (RP11-645N11.3-001) 103030104-103031354 antisense
ENSG00000238324 (RN7SKP198)
RNA, 7SK small nuclear pseudogene 198 		ENST00000459286 (RN7SKP198-201) 102857450-102857755 misc_RNA
ENSG00000252643 (RNU6-1136P)
RNA, U6 small nuclear 1136, pseudogene 		ENST00000516834 (RNU6-1136P-201) 102834605-102834708 snRNA
ENSG00000264045 (AC073127.1)
 ENST00000579931 (AC073127.1-201) 103014256-103014355 miRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0005CF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047221-ENSMUSG00000048520 CGP 10090 5:21424958-21645605
GeneTranscriptPositionBiotype
ENSMUSG00000039883 (Lrrc17)
leucine rich repeat containing 17 		ENSMUST00000035651 (Lrrc17-201) 21543527-21575900 protein_coding
ENSMUSG00000047221 (Fam185a)
family with sequence similarity 185, member A 		ENSMUST00000056045 (Fam185a-001) 21424958-21482124 protein_coding
ENSMUST00000146056 (Fam185a-003) 21434729-21480804 processed_transcript
ENSMUST00000153301 (Fam185a-002) 21425001-21434594 retained_intron
ENSMUSG00000048520 (Fbxl13)
F-box and leucine-rich repeat protein 13 		ENSMUST00000051358 (Fbxl13-001) 21483847-21645605 protein_coding
ENSMUST00000115234 (Fbxl13-003) 21519179-21645557 protein_coding
ENSMUST00000137788 (Fbxl13-002) 21490200-21645587 retained_intron
ENSMUST00000153598 (Fbxl13-004) 21581181-21603658 processed_transcript

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CF_0001ENSG00000128606ENST00000249377ENST00000339431ENST00000455453ENST00000485478ENST00000498487ENSG00000161040ENST00000313221ENST00000379305ENST00000379308ENST00000436908ENST00000440067ENST00000448002ENST00000455112ENST00000456695ENST00000468216ENST00000471074ENST00000477915ENST00000480422ENSG00000222011ENST00000409231ENST00000413034ENST00000418198ENST00000420217ENST00000442873ENST00000481697ENST00000487807ENST00000496790ENSG00000230257ENST00000420058ENSG00000236226ENST00000447336ENSG00000238324ENST00000459286ENSG00000252643ENST00000516834ENSG00000264045ENST00000579931CIL_0005CF_0002ENSMUSG00000039883ENSMUST00000035651ENSMUSG00000047221ENSMUST00000056045ENSMUST00000146056ENSMUST00000153301ENSMUSG00000048520ENSMUST00000051358ENSMUST00000115234ENSMUST00000137788ENSMUST00000153598
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CF_0001ENSG00000128606ENST00000249377ENST00000339431ENST00000455453ENST00000485478ENSG00000161040ENST00000313221ENST00000436908ENST00000448002ENST00000455112ENST00000456695ENST00000480422ENSG00000222011ENST00000409231ENST00000413034ENST00000418198ENST00000420217ENST00000442873ENST00000481697ENST00000487807ENSG00000230257ENST00000420058ENSG00000236226ENST00000447336ENSG00000238324ENST00000459286ENSG00000252643ENST00000516834ENSG00000264045ENST00000579931CIL_0005CF_0002ENSMUSG00000039883ENSMUST00000035651ENSMUSG00000047221ENSMUST00000056045ENSMUST00000146056ENSMUST00000153301ENSMUSG00000048520ENSMUST00000051358ENSMUST00000137788
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128606 ENST00000249377 N/A 0.740±0.00 N/A N/A N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000339431 0.250±0.00 0.426±0.00 N/A 0.244±0.08 0.914±0.75 0.577±0.32 0.762±0.12 0.415±0.32 1.099±1.02 0.421±0.00 0.105±0.00 8.365±9.00 0.376±0.19 4.923±0.00
ENST00000455453 N/A N/A N/A N/A N/A N/A N/A 0.502±0.00 N/A N/A N/A N/A N/A N/A
ENST00000485478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A
ENST00000498487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000161040 ENST00000313221 N/A N/A N/A 0.200±0.00 0.165±0.00 N/A N/A N/A N/A N/A N/A 0.621±0.00 N/A N/A
ENST00000379305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436908 N/A N/A N/A N/A N/A N/A N/A N/A 0.556±0.00 0.125±0.00 N/A N/A N/A 3.381±0.00
ENST00000440067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448002 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.027±0.00
ENST00000456695 0.098±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.566±0.00 N/A N/A N/A
ENSG00000222011 ENST00000409231 0.371±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.212±0.00 0.442±0.00 3.664±0.00 0.596±0.00 N/A
ENST00000413034 N/A N/A 1.890±0.00 1.674±0.00 2.570±0.00 N/A N/A 4.131±0.00 1.737±0.00 0.847±0.00 N/A 8.204±0.00 2.371±0.00 1.202±0.87
ENST00000418198 N/A N/A N/A N/A 2.158±0.71 N/A 1.237±0.00 N/A N/A 0.804±0.00 3.668±0.00 N/A 0.881±0.00 3.378±0.00
ENST00000420217 0.431±0.00 0.391±0.00 N/A 0.659±0.13 0.969±0.00 0.521±0.06 0.213±0.00 N/A 1.216±0.00 N/A 0.250±0.09 1.106±0.59 0.493±0.05 0.481±0.06
ENST00000442873 N/A N/A N/A 0.400±0.00 N/A 0.721±0.00 0.231±0.00 N/A N/A 0.240±0.00 0.776±0.00 0.400±0.06 N/A 0.488±0.00
ENST00000481697 N/A N/A N/A N/A N/A 1.499±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487807 N/A N/A N/A 3.552±0.00 N/A 3.007±0.00 2.149±0.00 3.611±0.00 N/A 1.406±1.10 1.394±0.00 N/A N/A N/A
ENST00000496790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230257 ENST00000420058 0.136±0.00 0.053±0.00 N/A 0.013±0.00 0.420±0.00 0.061±0.00 0.012±0.00 0.185±0.00 N/A 0.110±0.05 0.035±0.00 0.030±0.02 0.104±0.06 0.279±0.07
ENSG00000236226 ENST00000447336 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A 0.240±0.00
ENSG00000238324 ENST00000459286 N/A 0.122±0.00 0.334±0.00 0.197±0.00 0.743±0.00 N/A N/A N/A N/A 0.369±0.00 N/A 0.848±0.63 N/A 0.209±0.00
ENSG00000252643 ENST00000516834 N/A N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A 15.160±0.00 N/A N/A
ENSG00000264045 ENST00000579931 0.241±0.00 3.076±0.00 N/A 2.455±0.00 3.196±0.00 0.711±0.00 1.722±0.00 2.853±0.00 0.974±0.00 1.633±0.00 N/A 60.579±0.00 N/A 0.233±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039883 ENSMUST00000035651 19.189±13.30 0.807±0.15 9.375±0.62 306.775±428.81 11.587±0.65 2.870±0.43 1.687±0.10 0.696±0.11 0.607±0.59 3.220±0.31 0.771±0.29 15.636±3.30 9.548±11.24 7.904±0.00
ENSMUSG00000047221 ENSMUST00000056045 2.077±1.46 1.472±0.68 1.232±0.10 2.441±1.49 0.939±0.14 1.047±0.16 2.013±0.88 1.254±0.20 1.519±0.38 0.699±0.25 2.667±0.72 1.797±1.47 1.529±0.95 3.188±0.53
ENSMUST00000146056 N/A N/A N/A 10.092±0.00 N/A N/A N/A N/A N/A N/A N/A 7.530±4.28 4.068±2.35 8.833±6.12
ENSMUST00000153301 N/A 4.469±0.65 N/A N/A 1.262±0.29 1.327±0.39 N/A N/A 0.355±0.07 N/A N/A 2.103±0.91 N/A N/A
ENSMUSG00000048520 ENSMUST00000051358 N/A 0.202±0.00 N/A N/A N/A N/A 0.285±0.00 N/A 0.070±0.03 1.069±0.27 N/A 1.982±0.33 N/A 21.394±9.58
ENSMUST00000115234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137788 N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A
ENSMUST00000153598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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