C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339431 LRRC17-002 ENSG00000128606 9606 + 7:102912991-102944949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339431
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339431 0.250±0.00 0.426±0.00 0.244±0.08 0.914±0.75 0.577±0.32 0.762±0.12 0.415±0.32 1.099±1.02 0.421±0.00 0.105±0.00 8.365±9.00 0.376±0.19 4.923±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0001 VISTA 7:102540897-103142421
CIL_0005CF CIL_0005CF_0001 CGP 7:102748971-103074843
CIL_0005CK CIL_0005CK_0001 CGP 7:102813230-103074843
CIL_0005CL CIL_0005CL_0001 CGP 7:102912991-103099764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005615 ISS extracellular space
GO:0045671 ISS negative regulation of osteoclast differentiation
GO:0048539 ISS bone marrow development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035651 Lrrc17-201 protein_coding Mus_musculus 0 1410
ENSMUST00000051358 Fbxl13-001 protein_coding Mus_musculus 1e-19 102
ENSMUST00000115234 Fbxl13-003 protein_coding Mus_musculus 2e-17 95
ENSMUST00000137788 Fbxl13-002 retained_intron Mus_musculus 2e-17 95

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