C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: palladin, cytoskeletal associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129116 PALLD 9606 + 4:168497066-168928457 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261509 PALLD-001 168497066-168928457 protein_coding
  ENST00000393726 PALLD-012 168832005-168913969 protein_coding
  ENST00000503290 PALLD-013 168921575-168925393 protein_coding
  ENST00000503457 PALLD-010 168654732-168690701 protein_coding
  ENST00000504519 PALLD-008 168631615-168690663 protein_coding
  ENST00000505667 PALLD-002 168497104-168926272 protein_coding
  ENST00000507325 PALLD-017 168894441-168903835 retained_intron
  ENST00000507699 PALLD-006 168897977-168928417 retained_intron
  ENST00000507735 PALLD-005 168832041-168928445 protein_coding
  ENST00000508898 PALLD-003 168511568-168700900 protein_coding
  ENST00000510998 PALLD-011 168712159-168898686 protein_coding
  ENST00000511611 PALLD-016 168894169-168898516 retained_intron
  ENST00000511682 PALLD-015 168898559-168904261 retained_intron
  ENST00000511948 PALLD-007 168497124-168511588 protein_coding
  ENST00000512127 PALLD-004 168631617-168926487 protein_coding
  ENST00000513187 PALLD-014 168894641-168914075 retained_intron
  ENST00000513245 PALLD-009 168648777-168690628 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261509ENST00000505667ENST00000507699ENST00000507735ENST00000512127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261509 N/A N/A N/A N/A N/A N/A 8.762±0.00 N/A N/A N/A 7.402±0.00 N/A N/A N/A
ENST00000505667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.666±0.00 N/A N/A N/A
ENST00000507699 N/A N/A N/A 1.949±0.00 10.647±0.00 7.784±0.00 4.546±0.00 N/A N/A 10.995±0.00 N/A 5.727±0.00 N/A N/A
ENST00000507735 17.894±0.00 64.340±0.00 2.316±0.00 9.493±0.00 23.237±8.66 65.759±56.84 56.125±0.00 55.002±0.00 22.676±18.99 44.499±35.39 N/A 33.753±22.57 48.940±17.32 64.914±16.41
ENST00000512127 N/A N/A 2.935±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005884 IDA actin filament
GO:0005925 IDA focal adhesion
GO:0007010 NAS cytoskeleton organization
GO:0042995 IEA cell projection
GO:0051371 TAS muscle alpha-actinin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040009 palld palladin, cytoskeletal associated protein protein_coding Danio_rerio
ENSMUSG00000058056 Palld palladin, cytoskeletal associated protein protein_coding Mus_musculus

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