C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: palladin, cytoskeletal associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507735 PALLD-005 ENSG00000129116 9606 + 4:168832041-168928445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000507735
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000507735 17.894±0.00 64.340±0.00 2.316±0.00 9.493±0.00 23.237±8.66 65.759±56.84 56.125±0.00 55.002±0.00 22.676±18.99 44.499±35.39 33.753±22.57 48.940±17.32 64.914±16.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005884 IDA actin filament
GO:0005925 IDA focal adhesion
GO:0007010 NAS cytoskeleton organization
GO:0042995 IEA cell projection
GO:0051371 TAS muscle alpha-actinin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121200 Palld-003 protein_coding Mus_musculus 0 2333
ENSMUST00000121493 Palld-004 protein_coding Mus_musculus 0 2329
ENSMUST00000121785 Palld-001 protein_coding Mus_musculus 0 1626
ENSMUST00000034057 Palld-201 protein_coding Mus_musculus 0 1587
ENSMUST00000135439 Palld-006 protein_coding Mus_musculus 0 1352
ENSMUST00000136825 Palld-008 retained_intron Mus_musculus 0 438

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