C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: palladin, cytoskeletal associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512127 PALLD-004 ENSG00000129116 9606 + 4:168631617-168926487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000512127
Transcript ID Bladder
ENST00000512127 2.935±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005884 IDA actin filament
GO:0005925 IDA focal adhesion
GO:0007010 NAS cytoskeleton organization
GO:0042995 IEA cell projection
GO:0051371 TAS muscle alpha-actinin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034057 Palld-201 protein_coding Mus_musculus 0 2654
ENSMUST00000121493 Palld-004 protein_coding Mus_musculus 0 1860
ENSMUST00000121200 Palld-003 protein_coding Mus_musculus 0 1860
ENSMUST00000121785 Palld-001 protein_coding Mus_musculus 0 1620
ENSMUST00000135439 Palld-006 protein_coding Mus_musculus 0 1352
ENSMUST00000149042 Palld-005 retained_intron Mus_musculus 0 1081
ENSMUST00000123523 Palld-002 retained_intron Mus_musculus 0 448
ENSMUST00000136825 Palld-008 retained_intron Mus_musculus 0 438

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