C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: palladin, cytoskeletal associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058056 Palld 10090 - 8:61513246-61902690 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034057 Palld-201 61515021-61902690 protein_coding
  ENSMUST00000121200 Palld-003 61513248-61591142 protein_coding
  ENSMUST00000121493 Palld-004 61513252-61760089 protein_coding
  ENSMUST00000121785 Palld-001 61513246-61902669 protein_coding
  ENSMUST00000123523 Palld-002 61707212-61760089 retained_intron
  ENSMUST00000135439 Palld-006 61515913-61591139 protein_coding
  ENSMUST00000136825 Palld-008 61525121-61533841 retained_intron
  ENSMUST00000149042 Palld-005 61683509-61760098 retained_intron
  ENSMUST00000153495 Palld-007 61514925-61515900 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000034057ENSMUST00000121200ENSMUST00000121493ENSMUST00000121785ENSMUST00000135439
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000034057 N/A N/A N/A 1.382±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121200 16.471±0.00 13.894±4.63 1.078±0.00 15.375±4.53 29.567±2.60 N/A 12.964±5.66 8.319±3.17 15.116±7.07 N/A 35.217±12.48 0.839±0.05
ENSMUST00000121493 30.663±2.91 N/A 2.127±0.87 N/A 4.281±0.79 5.761±0.77 N/A 0.248±0.00 N/A N/A 4.618±0.81 0.980±0.48
ENSMUST00000121785 N/A N/A N/A N/A N/A N/A N/A 0.200±0.00 N/A 3.198±0.00 N/A 0.869±0.00
ENSMUST00000135439 12.434±0.08 N/A 0.437±0.00 7.505±1.24 N/A N/A N/A 5.526±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KH CIL_0006KH_0002 CGP 8:61487734-61902690

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005884 ISS actin filament
GO:0005925 IEA focal adhesion
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040009 palld palladin, cytoskeletal associated protein protein_coding Danio_rerio
ENSG00000129116 PALLD palladin, cytoskeletal associated protein protein_coding Homo_sapiens

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