C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 44 (choline transporter), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129353 SLC44A2 9606 + 19:10602457-10644559 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335757 SLC44A2-004 10625258-10644559 protein_coding
  ENST00000407327 SLC44A2-002 10602510-10644550 protein_coding
  ENST00000586078 SLC44A2-003 10625525-10644557 protein_coding
  ENST00000586549 SLC44A2-007 10637744-10644130 protein_coding
  ENST00000588214 SLC44A2-014 10636926-10642385 processed_transcript
  ENST00000588393 SLC44A2-013 10631706-10637702 retained_intron
  ENST00000588409 SLC44A2-012 10625594-10635234 nonsense_mediated_decay
  ENST00000588465 SLC44A2-001 10602457-10636496 retained_intron
  ENST00000588688 SLC44A2-009 10625520-10631721 protein_coding
  ENST00000589561 SLC44A2-006 10635804-10644555 retained_intron
  ENST00000590382 SLC44A2-008 10602457-10631918 protein_coding
  ENST00000590475 SLC44A2-015 10642336-10643398 retained_intron
  ENST00000590857 SLC44A2-010 10625520-10631704 protein_coding
  ENST00000591194 SLC44A2-016 10637644-10643528 protein_coding
  ENST00000592293 SLC44A2-011 10625594-10632156 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335757ENST00000407327ENST00000586078ENST00000586549ENST00000588214ENST00000588393ENST00000588409ENST00000589561ENST00000590857ENST00000591194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335757 N/A N/A N/A N/A N/A 1.870±0.00 N/A N/A N/A N/A N/A 6.993±4.92 N/A N/A
ENST00000407327 61.912±0.00 80.793±0.00 5.884±0.00 17.833±11.97 18.873±13.50 18.569±13.79 11.010±10.24 33.474±30.31 6.709±2.99 42.491±33.54 13.171±7.48 15.946±9.34 146.127±68.61 42.767±0.00
ENST00000586078 N/A N/A 1.543±0.00 9.934±7.64 1.584±0.00 10.813±0.00 4.405±2.47 11.475±0.00 2.291±0.00 N/A 10.774±0.00 N/A N/A 8.412±0.00
ENST00000586549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.262±0.00 17.001±0.00 35.854±0.00 45.680±0.00
ENST00000588214 N/A N/A N/A N/A N/A N/A 3.126±0.00 N/A N/A 13.309±0.00 N/A N/A N/A N/A
ENST00000588393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.234±0.00 76.705±0.00 68.508±0.00
ENST00000588409 N/A N/A 12.764±0.00 N/A 13.952±0.00 N/A N/A N/A 11.029±0.00 N/A N/A 17.371±9.35 73.213±0.00 N/A
ENST00000589561 N/A 27.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.262±0.00
ENST00000590857 N/A N/A N/A N/A N/A 13.576±0.00 N/A N/A N/A 15.053±0.00 N/A N/A N/A N/A
ENST00000591194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.330±0.00 92.310±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000491 CIL_000491_0001 CGP 19:10572671-10644559
CIL_000492 CIL_000492_0001 CGP 19:10602457-10692417

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0007165 IMP signal transduction
GO:0015220 TAS choline transmembrane transporter activity
GO:0015871 TAS choline transport
GO:0016021 TAS integral component of membrane
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017554 SLC44A2 (1 of 2) solute carrier family 44 (choline transporter), member 2 protein_coding Danio_rerio
ENSDARG00000037059 slc44a2 solute carrier family 44, member 2 protein_coding Danio_rerio
ENSMUSG00000057193 Slc44a2 solute carrier family 44, member 2 protein_coding Mus_musculus

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