C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000491_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129354-ENSG00000129353 CGP 9606 19:10572671-10644559
GeneTranscriptPositionBiotype
ENSG00000129353 (SLC44A2)
solute carrier family 44 (choline transporter), member 2 		ENST00000335757 (SLC44A2-004) 10625258-10644559 protein_coding
ENST00000407327 (SLC44A2-002) 10602510-10644550 protein_coding
ENST00000586078 (SLC44A2-003) 10625525-10644557 protein_coding
ENST00000586549 (SLC44A2-007) 10637744-10644130 protein_coding
ENST00000588214 (SLC44A2-014) 10636926-10642385 processed_transcript
ENST00000588393 (SLC44A2-013) 10631706-10637702 retained_intron
ENST00000588409 (SLC44A2-012) 10625594-10635234 nonsense_mediated_decay
ENST00000588465 (SLC44A2-001) 10602457-10636496 retained_intron
ENST00000588688 (SLC44A2-009) 10625520-10631721 protein_coding
ENST00000589561 (SLC44A2-006) 10635804-10644555 retained_intron
ENST00000590382 (SLC44A2-008) 10602457-10631918 protein_coding
ENST00000590475 (SLC44A2-015) 10642336-10643398 retained_intron
ENST00000590857 (SLC44A2-010) 10625520-10631704 protein_coding
ENST00000591194 (SLC44A2-016) 10637644-10643528 protein_coding
ENST00000592293 (SLC44A2-011) 10625594-10632156 nonsense_mediated_decay
ENSG00000129354 (AP1M2)
adaptor-related protein complex 1, mu 2 subunit 		ENST00000250244 (AP1M2-002) 10572672-10587314 protein_coding
ENST00000587069 (AP1M2-008) 10572671-10577314 protein_coding
ENST00000589348 (AP1M2-009) 10572689-10577231 protein_coding
ENST00000589571 (AP1M2-004) 10581746-10587299 nonsense_mediated_decay
ENST00000589684 (AP1M2-006) 10579736-10587250 protein_coding
ENST00000589809 (AP1M2-005) 10583560-10587219 retained_intron
ENST00000590923 (AP1M2-001) 10572671-10587315 protein_coding
ENST00000591240 (AP1M2-010) 10577272-10587219 protein_coding
ENST00000591676 (AP1M2-003) 10581282-10587295 protein_coding
ENST00000592285 (AP1M2-007) 10574358-10577272 protein_coding
ENSG00000271010 (CTC-539A10.7)
 ENST00000603599 (CTC-539A10.7-001) 10598001-10598965 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000491_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003309-ENSMUSG00000057193 CGP 10090 9:21295457-21355025
GeneTranscriptPositionBiotype
ENSMUSG00000003309 (Ap1m2)
adaptor protein complex AP-1, mu 2 subunit 		ENSMUST00000003397 (Ap1m2-201) 21295457-21312333 protein_coding
ENSMUST00000115433 (Ap1m2-202) 21295457-21312333 protein_coding
ENSMUSG00000057193 (Slc44a2)
solute carrier family 44, member 2 		ENSMUST00000034697 (Slc44a2-201) 21337828-21355025 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000491_0001ENSG00000129353ENST00000335757ENST00000407327ENST00000586078ENST00000586549ENST00000588214ENST00000588393ENST00000588409ENST00000588465ENST00000588688ENST00000589561ENST00000590382ENST00000590475ENST00000590857ENST00000591194ENST00000592293ENSG00000129354ENST00000250244ENST00000587069ENST00000589348ENST00000589571ENST00000589684ENST00000589809ENST00000590923ENST00000591240ENST00000591676ENST00000592285ENSG00000271010ENST00000603599CIL_000491_0002ENSMUSG00000003309ENSMUST00000003397ENSMUST00000115433ENSMUSG00000057193ENSMUST00000034697
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000491_0001ENSG00000129353ENST00000335757ENST00000407327ENST00000586078ENST00000586549ENST00000588214ENST00000588393ENST00000588409ENST00000589561ENST00000590857ENST00000591194ENSG00000129354ENST00000250244ENST00000587069ENST00000589348ENST00000589571ENST00000589684ENST00000590923ENST00000591240ENST00000592285ENSG00000271010ENST00000603599CIL_000491_0002ENSMUSG00000003309ENSMUST00000003397ENSMUST00000115433ENSMUSG00000057193ENSMUST00000034697
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129353 ENST00000335757 N/A N/A N/A N/A N/A 1.870±0.00 N/A N/A N/A N/A N/A 6.993±4.92 N/A N/A
ENST00000407327 61.912±0.00 80.793±0.00 5.884±0.00 17.833±11.97 18.873±13.50 18.569±13.79 11.010±10.24 33.474±30.31 6.709±2.99 42.491±33.54 13.171±7.48 15.946±9.34 146.127±68.61 42.767±0.00
ENST00000586078 N/A N/A 1.543±0.00 9.934±7.64 1.584±0.00 10.813±0.00 4.405±2.47 11.475±0.00 2.291±0.00 N/A 10.774±0.00 N/A N/A 8.412±0.00
ENST00000586549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.262±0.00 17.001±0.00 35.854±0.00 45.680±0.00
ENST00000588214 N/A N/A N/A N/A N/A N/A 3.126±0.00 N/A N/A 13.309±0.00 N/A N/A N/A N/A
ENST00000588393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.234±0.00 76.705±0.00 68.508±0.00
ENST00000588409 N/A N/A 12.764±0.00 N/A 13.952±0.00 N/A N/A N/A 11.029±0.00 N/A N/A 17.371±9.35 73.213±0.00 N/A
ENST00000588465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589561 N/A 27.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.262±0.00
ENST00000590382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590857 N/A N/A N/A N/A N/A 13.576±0.00 N/A N/A N/A 15.053±0.00 N/A N/A N/A N/A
ENST00000591194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.330±0.00 92.310±0.00 N/A
ENST00000592293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000129354 ENST00000250244 N/A N/A 1.612±0.00 N/A 1.752±0.87 2.946±1.49 N/A 36.899±0.00 N/A 5.778±5.37 N/A 12.603±8.84 27.622±6.78 7.123±2.53
ENST00000587069 N/A 0.403±0.00 N/A 0.180±0.01 N/A N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A
ENST00000589348 0.171±0.00 N/A N/A 0.416±0.00 2.359±0.00 8.578±0.00 0.044±0.00 22.987±0.00 1.424±0.00 N/A N/A N/A N/A 4.357±0.00
ENST00000589571 N/A 0.518±0.00 0.934±0.00 0.199±0.00 N/A N/A N/A N/A 2.235±0.00 2.648±0.00 N/A N/A N/A N/A
ENST00000589684 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590923 N/A N/A N/A N/A N/A 1.473±0.00 N/A N/A 0.091±0.04 3.497±0.00 N/A 5.809±0.00 4.771±0.00 N/A
ENST00000591240 N/A N/A N/A N/A 1.352±0.00 3.916±0.00 N/A N/A N/A 2.540±0.00 N/A N/A N/A N/A
ENST00000591676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592285 0.206±0.00 N/A N/A 0.346±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271010 ENST00000603599 0.206±0.00 0.649±0.00 N/A 0.144±0.00 0.247±0.00 0.195±0.00 0.093±0.00 0.261±0.00 0.057±0.00 0.192±0.00 0.014±0.00 0.074±0.04 0.073±0.00 0.211±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003309 ENSMUST00000003397 3.142±3.12 0.030±0.00 10.261±0.80 0.335±0.10 4.355±1.49 24.448±7.49 0.221±0.00 8.528±2.33 0.084±0.08 8.443±2.66 0.021±0.00 6.756±2.67 18.611±5.75 0.827±0.69
ENSMUST00000115433 1.411±1.41 0.006±0.00 3.970±0.87 0.178±0.01 3.117±1.88 13.187±4.75 0.291±0.00 3.807±1.12 0.065±0.05 4.344±1.21 0.011±0.01 3.583±2.48 7.211±1.90 0.369±0.12
ENSMUSG00000057193 ENSMUST00000034697 17.223±4.38 13.964±3.53 47.805±4.96 12.574±0.65 24.274±7.89 9.729±1.34 24.222±3.30 14.086±2.14 4.768±2.42 72.924±10.55 49.202±3.83 19.203±6.30 19.029±13.18 10.662±0.34

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