C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 44 (choline transporter), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586078 SLC44A2-003 ENSG00000129353 9606 + 19:10625525-10644557 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleTestisENST00000586078
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Testis
ENST00000586078 1.543±0.00 9.934±7.64 1.584±0.00 10.813±0.00 4.405±2.47 11.475±0.00 2.291±0.00 10.774±0.00 8.412±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000491 CIL_000491_0001 CGP 19:10572671-10644559
CIL_000492 CIL_000492_0001 CGP 19:10602457-10692417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005765 IDA lysosomal membrane
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0007165 IMP signal transduction
GO:0015220 TAS choline transmembrane transporter activity
GO:0015871 TAS choline transport
GO:0016021 TAS integral component of membrane
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034697 Slc44a2-201 protein_coding Mus_musculus 0 2100

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