C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 44 (choline transporter), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407327 SLC44A2-002 ENSG00000129353 9606 + 19:10602510-10644550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407327 61.912±0.00 80.793±0.00 5.884±0.00 17.833±11.97 18.873±13.50 18.569±13.79 11.010±10.24 33.474±30.31 6.709±2.99 42.491±33.54 13.171±7.48 15.946±9.34 146.127±68.61 42.767±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000491 CIL_000491_0001 CGP 19:10572671-10644559
CIL_000492 CIL_000492_0001 CGP 19:10602457-10692417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005765 IDA lysosomal membrane
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0007165 IMP signal transduction
GO:0015220 TAS choline transmembrane transporter activity
GO:0015871 TAS choline transport
GO:0016021 TAS integral component of membrane
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034697 Slc44a2-201 protein_coding Mus_musculus 0 2189

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