C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulon 4 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130347 RTN4IP1 9606 - 6:106571971-106629487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369063 RTN4IP1-001 106571971-106629487 protein_coding
  ENST00000493619 RTN4IP1-002 106571977-106572411 processed_transcript
  ENST00000498091 RTN4IP1-003 106571975-106583631 processed_transcript
  ENST00000539449 RTN4IP1-201 106572003-106629021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369063ENST00000493619ENST00000498091ENST00000539449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369063 1.122±0.00 3.233±0.00 1.413±0.00 3.626±0.65 2.781±0.00 2.465±1.35 4.324±2.01 3.359±1.74 2.473±1.25 0.272±0.07 1.789±0.35 3.018±1.45 2.452±0.87 5.185±0.64
ENST00000493619 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.820±0.00 N/A N/A N/A N/A
ENST00000498091 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A
ENST00000539449 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.200±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PN CIL_0008PN_0001 VISTA 6:106445731-107046322
CIL_00085F CIL_00085F_0001 VISTA 6:106472954-107074777
CIL_0001OY CIL_0001OY_0002 CGP 6:106511855-106629487
CIL_0001OX CIL_0001OX_0002 CGP 6:106571971-106668417

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0016747 IEA transferase activity, transferring acyl groups other than amino-acyl groups
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031366 rtn4ip1 reticulon 4 interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000019864 Rtn4ip1 reticulon 4 interacting protein 1 protein_coding Mus_musculus

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