C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: olfactomedin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130558 OLFM1 9606 + 9:135075422-135121179 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252854 OLFM1-001 135075520-135121178 protein_coding
  ENST00000277415 OLFM1-002 135075422-135098107 protein_coding
  ENST00000339720 OLFM1-010 135086554-135098352 protein_coding
  ENST00000371793 OLFM1-004 135087739-135120913 protein_coding
  ENST00000371796 OLFM1-003 135087260-135121179 protein_coding
  ENST00000371799 OLFM1-006 135075422-135077391 protein_coding
  ENST00000371801 OLFM1-007 135075666-135076487 protein_coding
  ENST00000392991 OLFM1-009 135087674-135098065 protein_coding
  ENST00000483042 OLFM1-005 135105640-135120911 retained_intron
  ENST00000539529 OLFM1-011 135087669-135098466 protein_coding
  ENST00000539877 OLFM1-013 135095060-135119654 protein_coding
  ENST00000545657 OLFM1-012 135095986-135119976 protein_coding
  ENST00000615948 OLFM1-201 135075423-135077389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252854ENST00000277415ENST00000371793ENST00000371796ENST00000392991ENST00000483042ENST00000539529ENST00000539877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252854 N/A N/A 0.339±0.00 86.084±0.00 0.332±0.00 2.450±1.88 1.212±1.15 N/A 0.573±0.00 2.240±0.00 1.779±0.00 0.373±0.06 N/A 0.702±0.00
ENST00000277415 5.543±0.00 10.184±0.00 N/A 51.853±0.00 4.411±0.00 13.705±0.00 0.654±0.52 0.053±0.00 N/A 4.550±0.00 N/A 16.267±0.00 N/A 7.667±0.00
ENST00000371793 2.398±0.00 5.114±0.00 0.105±0.00 N/A 0.862±0.66 5.906±0.00 1.278±0.00 0.117±0.00 N/A 1.590±0.00 0.377±0.00 0.163±0.00 0.316±0.02 1.806±0.52
ENST00000371796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A N/A
ENST00000392991 N/A N/A N/A 63.852±35.34 N/A N/A N/A N/A 0.514±0.00 N/A 0.262±0.00 0.832±0.00 0.491±0.24 N/A
ENST00000483042 N/A N/A N/A N/A N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A
ENST00000539529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.155±0.00 1.741±0.00
ENST00000539877 N/A N/A 0.264±0.00 N/A 1.473±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ET CIL_0001ET_0001 CGP 9:134905890-135121179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005515 IPI:IEA protein binding
GO:0005615 IEA extracellular space
GO:0007399 TAS nervous system development
GO:0030054 IEA cell junction
GO:0032281 IEA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0051259 IEA protein oligomerization
GO:1902003 IEA regulation of beta-amyloid formation
GO:1902430 IEA negative regulation of beta-amyloid formation
GO:2001223 IEA negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014053 olfm1b olfactomedin 1b protein_coding Danio_rerio
ENSDARG00000018270 olfm1a olfactomedin 1a protein_coding Danio_rerio
ENSMUSG00000026833 Olfm1 olfactomedin 1 protein_coding Mus_musculus

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