C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: olfactomedin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026833 Olfm1 10090 + 2:28192992-28230736 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028177 Olfm1-001 28205659-28230736 protein_coding
  ENSMUST00000100244 Olfm1-201 28193093-28230736 protein_coding
  ENSMUST00000102879 Olfm1-003 28205659-28214425 protein_coding
  ENSMUST00000113920 Olfm1-002 28192992-28230462 protein_coding
  ENSMUST00000152415 Olfm1-004 28192992-28214425 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028177ENSMUST00000100244ENSMUST00000102879ENSMUST00000113920ENSMUST00000152415
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028177 7.421±0.04 5.915±2.25 1.826±0.00 14.895±0.00 3.277±0.95 4.582±1.02 3.686±1.02 8.844±1.06 1.082±0.32 3.077±0.12 0.773±0.39 9.562±4.37 0.812±0.42 1.179±0.82
ENSMUST00000100244 9.776±4.03 13.275±1.85 7.010±2.05 95.632±82.57 6.913±1.79 3.286±1.86 N/A N/A 0.508±0.29 3.557±0.85 0.651±0.15 7.104±2.22 0.873±0.34 0.291±0.03
ENSMUST00000102879 N/A 12.314±5.02 5.848±0.79 265.963±0.00 5.356±0.44 2.550±0.00 N/A N/A N/A N/A 1.212±0.41 5.532±1.36 0.550±0.00 0.328±0.00
ENSMUST00000113920 23.379±7.36 N/A 5.159±0.11 51.552±14.18 10.705±2.40 3.422±1.56 2.869±0.56 4.484±0.71 0.569±0.25 7.745±0.78 0.681±0.00 5.731±1.53 0.639±0.41 0.162±0.06
ENSMUST00000152415 N/A 9.341±2.74 N/A N/A 4.398±0.00 N/A N/A N/A N/A N/A 0.733±0.00 N/A N/A 0.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ET CIL_0001ET_0002 CGP 2:28076378-28230736

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0030054 IEA cell junction
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0051259 IDA protein oligomerization
GO:1902003 IDA regulation of beta-amyloid formation
GO:1902430 IDA negative regulation of beta-amyloid formation
GO:2001223 IDA negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014053 olfm1b olfactomedin 1b protein_coding Danio_rerio
ENSDARG00000018270 olfm1a olfactomedin 1a protein_coding Danio_rerio
ENSG00000130558 OLFM1 olfactomedin 1 protein_coding Homo_sapiens

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