C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: olfactomedin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371793 OLFM1-004 ENSG00000130558 9606 + 9:135087739-135120913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000371793
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000371793 2.398±0.00 5.114±0.00 0.105±0.00 0.862±0.66 5.906±0.00 1.278±0.00 0.117±0.00 1.590±0.00 0.377±0.00 0.163±0.00 0.316±0.02 1.806±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ET CIL_0001ET_0001 CGP 9:134905890-135121179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005515 IPI:IEA protein binding
GO:0005615 IEA extracellular space
GO:0007399 TAS nervous system development
GO:0030054 IEA cell junction
GO:0032281 IEA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0051259 IEA protein oligomerization
GO:1902003 IEA regulation of beta-amyloid formation
GO:1902430 IEA negative regulation of beta-amyloid formation
GO:2001223 IEA negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028177 Olfm1-001 protein_coding Mus_musculus 0 2529
ENSMUST00000100244 Olfm1-201 protein_coding Mus_musculus 0 2071
ENSMUST00000113920 Olfm1-002 protein_coding Mus_musculus 0 2071
ENSMUST00000102879 Olfm1-003 protein_coding Mus_musculus 0 913
ENSMUST00000152415 Olfm1-004 processed_transcript Mus_musculus 0 457

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