C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 62
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130783 CCDC62 9606 + 12:122774327-122827528 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253079 CCDC62-001 122774327-122827528 protein_coding
  ENST00000341952 CCDC62-002 122774528-122827384 nonsense_mediated_decay
  ENST00000392440 CCDC62-201 122788785-122827211 protein_coding
  ENST00000392441 CCDC62-005 122774526-122827211 protein_coding
  ENST00000537566 CCDC62-003 122776558-122827378 protein_coding
  ENST00000539171 CCDC62-004 122774532-122788811 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000253079ENST00000341952ENST00000392440ENST00000392441ENST00000537566ENST00000539171
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000253079 N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 0.042±0.00 N/A 0.020±0.00 21.299±12.82
ENST00000341952 N/A N/A 0.042±0.00 0.490±0.00 N/A N/A 0.138±0.00 N/A 0.027±0.00 0.122±0.06 0.053±0.02 N/A 31.372±17.37
ENST00000392440 0.053±0.00 N/A N/A 0.135±0.00 N/A 0.026±0.00 0.054±0.00 0.030±0.00 N/A N/A 0.044±0.00 0.018±0.00 5.768±0.00
ENST00000392441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 12.567±0.00
ENST00000537566 N/A 0.077±0.00 0.073±0.00 N/A 0.063±0.00 0.032±0.00 N/A 0.007±0.00 0.049±0.00 N/A N/A 0.028±0.00 N/A
ENST00000539171 N/A N/A N/A N/A N/A N/A N/A N/A 0.336±0.00 1.051±0.00 N/A 0.167±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002P9 CIL_0002P9_0001 CGP 12:122752774-122827528
CIL_00084E CIL_00084E_0001 VISTA 12:122762377-123367178
CIL_0001EI CIL_0001EI_0001 CGP 12:122774327-122862960

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0030331 IPI estrogen receptor binding
GO:0030374 IPI ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0071392 IDA cellular response to estradiol stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077445 hip1ra huntingtin interacting protein 1 related a protein_coding Danio_rerio
ENSMUSG00000061882 Ccdc62 coiled-coil domain containing 62 protein_coding Mus_musculus

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