C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002P9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139726-ENSG00000130783 CGP 9606 12:122752774-122827528
GeneTranscriptPositionBiotype
ENSG00000130783 (CCDC62)
coiled-coil domain containing 62 		ENST00000253079 (CCDC62-001) 122774327-122827528 protein_coding
ENST00000341952 (CCDC62-002) 122774528-122827384 nonsense_mediated_decay
ENST00000392440 (CCDC62-201) 122788785-122827211 protein_coding
ENST00000392441 (CCDC62-005) 122774526-122827211 protein_coding
ENST00000537566 (CCDC62-003) 122776558-122827378 protein_coding
ENST00000539171 (CCDC62-004) 122774532-122788811 protein_coding
ENSG00000139726 (DENR)
density-regulated protein 		ENST00000280557 (DENR-001) 122752774-122771064 protein_coding
ENST00000455982 (DENR-002) 122752824-122770070 protein_coding
ENST00000537955 (DENR-003) 122752847-122754287 retained_intron
ENST00000539463 (DENR-004) 122752827-122763256 retained_intron
ENSG00000206914 (Y_RNA)
Y RNA 		ENST00000384187 (Y_RNA.1-651) 122768099-122768200 misc_RNA
CIL_0002P9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023106-ENSMUSG00000061882 CGP 10090 5:123907175-123969895
GeneTranscriptPositionBiotype
ENSMUSG00000023106 (Denr)
density-regulated protein 		ENSMUST00000023869 (Denr-001) 123907175-123928832 protein_coding
ENSMUST00000166233 (Denr-002) 123907489-123927133 protein_coding
ENSMUST00000168899 (Denr-003) 123907269-123908508 processed_transcript
ENSMUST00000171639 (Denr-004) 123907282-123908488 retained_intron
ENSMUSG00000061882 (Ccdc62)
coiled-coil domain containing 62 		ENSMUST00000094320 (Ccdc62-001) 123930689-123968909 protein_coding
ENSMUST00000165148 (Ccdc62-201) 123930689-123969895 protein_coding
ENSMUST00000166129 (Ccdc62-003) 123927418-123938388 retained_intron
ENSMUST00000166983 (Ccdc62-002) 123930689-123936645 retained_intron
ENSMUST00000169898 (Ccdc62-004) 123946386-123954515 nonsense_mediated_decay
ENSMUST00000171881 (Ccdc62-005) 123954502-123957610 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P9_0001ENSG00000130783ENST00000253079ENST00000341952ENST00000392440ENST00000392441ENST00000537566ENST00000539171ENSG00000139726ENST00000280557ENST00000455982ENST00000537955ENST00000539463ENSG00000206914ENST00000384187CIL_0002P9_0002ENSMUSG00000023106ENSMUST00000023869ENSMUST00000166233ENSMUST00000168899ENSMUST00000171639ENSMUSG00000061882ENSMUST00000094320ENSMUST00000165148ENSMUST00000166129ENSMUST00000166983ENSMUST00000169898ENSMUST00000171881
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P9_0001ENSG00000130783ENST00000253079ENST00000341952ENST00000392440ENST00000392441ENST00000537566ENST00000539171ENSG00000139726ENST00000280557ENST00000455982ENSG00000206914ENST00000384187CIL_0002P9_0002ENSMUSG00000023106ENSMUST00000023869ENSMUST00000166233ENSMUST00000168899ENSMUSG00000061882ENSMUST00000094320ENSMUST00000166983
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130783 ENST00000253079 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 0.042±0.00 N/A 0.020±0.00 21.299±12.82
ENST00000341952 N/A N/A 0.042±0.00 0.490±0.00 N/A N/A 0.138±0.00 N/A N/A 0.027±0.00 0.122±0.06 0.053±0.02 N/A 31.372±17.37
ENST00000392440 0.053±0.00 N/A N/A 0.135±0.00 N/A 0.026±0.00 0.054±0.00 N/A 0.030±0.00 N/A N/A 0.044±0.00 0.018±0.00 5.768±0.00
ENST00000392441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 12.567±0.00
ENST00000537566 N/A 0.077±0.00 0.073±0.00 N/A 0.063±0.00 0.032±0.00 N/A N/A 0.007±0.00 0.049±0.00 N/A N/A 0.028±0.00 N/A
ENST00000539171 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.336±0.00 1.051±0.00 N/A 0.167±0.00 N/A
ENSG00000139726 ENST00000280557 8.232±0.00 5.961±0.00 4.005±0.00 7.529±1.74 5.863±4.79 5.576±2.01 3.985±0.57 5.188±4.20 5.427±2.87 3.606±0.92 2.221±0.64 11.590±2.28 11.074±2.07 7.388±0.14
ENST00000455982 N/A N/A 1.141±0.00 N/A N/A N/A N/A N/A N/A N/A 0.911±0.00 16.963±0.00 14.963±0.00 7.863±0.00
ENST00000537955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206914 ENST00000384187 N/A N/A N/A 0.181±0.00 0.349±0.00 N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A 0.163±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023106 ENSMUST00000023869 4.657±1.61 2.726±0.89 10.880±0.85 12.352±0.93 3.336±0.66 2.796±0.72 3.046±0.52 4.356±1.73 8.312±4.68 4.301±0.47 3.953±0.86 3.721±2.75 10.004±4.81 15.437±0.34
ENSMUST00000166233 N/A N/A 14.898±1.02 117.807±0.00 N/A N/A N/A N/A 16.419±7.37 N/A 16.680±4.24 52.690±44.95 72.118±88.22 205.944±0.00
ENSMUST00000168899 N/A 7.208±1.94 N/A N/A 6.747±1.66 6.898±1.69 18.858±4.18 16.369±5.12 17.152±3.91 11.717±0.57 N/A 6.546±3.14 28.293±0.00 N/A
ENSMUST00000171639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000061882 ENSMUST00000094320 1.435±0.11 0.955±0.21 3.464±0.71 2.209±0.01 1.532±0.33 0.701±0.08 0.494±0.00 1.460±0.27 0.996±0.28 1.524±0.32 N/A 1.692±0.72 N/A 36.193±10.86
ENSMUST00000165148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166983 N/A 2.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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