C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 62
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061882 Ccdc62 10090 + 5:123927418-123969895 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094320 Ccdc62-001 123930689-123968909 protein_coding
  ENSMUST00000165148 Ccdc62-201 123930689-123969895 protein_coding
  ENSMUST00000166129 Ccdc62-003 123927418-123938388 retained_intron
  ENSMUST00000166983 Ccdc62-002 123930689-123936645 retained_intron
  ENSMUST00000169898 Ccdc62-004 123946386-123954515 nonsense_mediated_decay
  ENSMUST00000171881 Ccdc62-005 123954502-123957610 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000094320ENSMUST00000166983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000094320 1.435±0.11 0.955±0.21 3.464±0.71 2.209±0.01 1.532±0.33 0.701±0.08 0.494±0.00 1.460±0.27 0.996±0.28 1.524±0.32 1.692±0.72 36.193±10.86
ENSMUST00000166983 N/A 2.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002PG CIL_0002PG_0002 CGP 5:123876736-123928832
CIL_0002P9 CIL_0002P9_0002 CGP 5:123907175-123969895
CIL_0001EI CIL_0001EI_0002 CGP 5:123927418-124003211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0030331 IEA estrogen receptor binding
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0071392 IEA cellular response to estradiol stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077445 hip1ra huntingtin interacting protein 1 related a protein_coding Danio_rerio
ENSG00000130783 CCDC62 coiled-coil domain containing 62 protein_coding Homo_sapiens

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