C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 62
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341952 CCDC62-002 ENSG00000130783 9606 + 12:122774528-122827384 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLungMuscleOvaryTestisENST00000341952
Transcript ID Bladder Brain Heart Lung Muscle Ovary Testis
ENST00000341952 0.042±0.00 0.490±0.00 0.138±0.00 0.027±0.00 0.122±0.06 0.053±0.02 31.372±17.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002P9 CIL_0002P9_0001 CGP 12:122752774-122827528
CIL_00084E CIL_00084E_0001 VISTA 12:122762377-123367178
CIL_0001EI CIL_0001EI_0001 CGP 12:122774327-122862960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0030331 IPI estrogen receptor binding
GO:0030374 IPI ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0071392 IDA cellular response to estradiol stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165148 Ccdc62-201 protein_coding Mus_musculus 0 1373
ENSMUST00000094320 Ccdc62-001 protein_coding Mus_musculus 0 1373

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