C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plexin A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130827 PLXNA3 9606 + X:154458281-154473646 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369682 PLXNA3-001 154458281-154473646 protein_coding
  ENST00000467463 PLXNA3-005 154466419-154467175 processed_transcript
  ENST00000478236 PLXNA3-004 154466091-154466765 retained_intron
  ENST00000480645 PLXNA3-006 154468617-154468869 processed_transcript
  ENST00000482598 PLXNA3-009 154464449-154464980 retained_intron
  ENST00000491066 PLXNA3-003 154468661-154469350 retained_intron
  ENST00000493546 PLXNA3-007 154469082-154470708 processed_transcript
  ENST00000495040 PLXNA3-008 154458284-154461374 processed_transcript
  ENST00000497802 PLXNA3-002 154470847-154472696 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369682ENST00000491066ENST00000495040ENST00000497802
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369682 1.019±0.00 1.844±0.00 0.092±0.00 1.472±0.00 1.877±1.15 2.051±1.53 1.098±0.00 0.849±0.79 0.317±0.00 2.367±1.47 0.577±0.49 8.956±5.99 2.543±0.23 2.600±0.11
ENST00000491066 N/A N/A N/A N/A N/A N/A 0.539±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000495040 N/A N/A N/A N/A N/A N/A 0.972±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000497802 N/A N/A N/A N/A N/A N/A N/A 0.724±0.00 N/A N/A 1.079±0.00 2.541±1.43 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K8 CIL_0006K8_0001 CGP X:154444126-154473646
CIL_0003LD CIL_0003LD_0001 CGP X:154458281-154479257

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002116 TAS semaphorin receptor complex
GO:0004872 IEA receptor activity
GO:0004888 NAS transmembrane signaling receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005886 TAS plasma membrane
GO:0007165 IEA signal transduction
GO:0007275 TAS:IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017154 IEA semaphorin receptor activity
GO:0021612 IEA facial nerve structural organization
GO:0021637 IEA trigeminal nerve structural organization
GO:0021766 IEA hippocampus development
GO:0021785 IEA branchiomotor neuron axon guidance
GO:0021860 IEA pyramidal neuron development
GO:0048843 IEA negative regulation of axon extension involved in axon guidance
GO:0050919 IEA negative chemotaxis
GO:0051495 IEA positive regulation of cytoskeleton organization
GO:0071526 NAS semaphorin-plexin signaling pathway
GO:1902287 IEA semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007172 plxna3 plexin A3 protein_coding Danio_rerio
ENSMUSG00000031398 Plxna3 plexin A3 protein_coding Mus_musculus

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